YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|219539636, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGSMENFEV ILFYIMVGAY IGSTVFYWIG MAAKKDVVTH LGTFAAIIGL IANTAAIALR  60
   61 WVITQRPPLT NGYEFILTFC WGIVIIYIFA EFRYKIKALG SFVMPVTFIL LMFIIMKMGP 120
  121 SERVAGAIPP ALKSQWLTFH VFTAMLAYGA FAISCGLGIM YLLKTGAGSH EKHEKETWLN 180
  181 RFPPENVLDE LAYKMIGFAF PMLTLCIVTG AIWANYAWGT YWSWDPKETW SLITWIIYAA 240
  241 YLHARLMYGW KGKRAAWMAI IGFAAVLFTF FGVNYLLPGL HSYA

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.88
Transmembrane Helix	10	30	0.95
Cytoplasmic	31	39	0.75
Transmembrane Helix	40	63	0.89
Non-Cytoplasmic	64	70	0.81
Transmembrane Helix	71	90	0.93
Cytoplasmic	91	97	0.82
Transmembrane Helix	98	119	0.90
Non-Cytoplasmic	120	138	0.88
Transmembrane Helix	139	163	0.87
Cytoplasmic	164	195	0.87
Transmembrane Helix	196	217	0.88
Non-Cytoplasmic	218	228	0.83
Transmembrane Helix	229	248	0.87
Cytoplasmic	249	255	0.82
Transmembrane Helix	256	277	0.93
Non-Cytoplasmic	278	284	0.82