YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109648354, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNQKLELNS NRLMRDCLIF FIAYVVLVVS FYFIAGDSLQ RVINITDMVD AKTTSGEITT  60
   61 ERTVKQDFIM RNDTLEYLVV KGATYDRENN DTLLITILDQ QGTALATSEL DTKGLENGDD 120
  121 WTISLSNPIF GVKGQTLTLV VRSERGTPGN AVTFVYGDSY AASRFEVGAQ IPENELLRVD 180
  181 DVPLDGTLCL SVVSSTKLAF GQYYWYGAAT VGVLLLIYLI VIVVNTKRGK ETGIVRLVSF 240
  241 FERYSFLIKQ LVSRDFKNKY KRSALGVLWS FLNPLLTMLV LYLVFSTLFQ SNIRNYPVYL 300
  301 LSGLVCWNFF SEASSMCLMS ITGNAALLTK VYVPMFIYPL SRAISSLINF LLALVPLFAV 360
  361 LIITKVSLTA EFFLLPFGIV CLFLFSLGIG LILASSMVFF RDTQFLWGVI AMLWMYLTPI 420
  421 FYLESIIPRQ WMLLYKMNPM YHIISFFRII LIENVSPEPK AYLLCLLAAI IPLTVGIIIF 480
  481 KKTKDKFILY I

Type	Start	End	Confidence
Cytoplasmic	1	16	0.92
Transmembrane Helix	17	36	0.95
Non-Cytoplasmic	37	202	0.99
Transmembrane Helix	203	224	0.94
Cytoplasmic	225	264	0.95
Transmembrane Helix	265	286	0.92
Non-Cytoplasmic	287	308	0.70
Transmembrane Helix	309	328	0.74
Cytoplasmic	329	342	0.58
Transmembrane Helix	343	364	0.89
Non-Cytoplasmic	365	371	0.57
Transmembrane Helix	372	395	0.90
Cytoplasmic	396	404	0.60
Transmembrane Helix	405	423	0.95
Non-Cytoplasmic	424	459	0.57
Transmembrane Helix	460	480	0.94
Cytoplasmic	481	491	0.72