YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GWT1_CHAGB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	37	0.62
Transmembrane Helix	38	57	0.69
Cytoplasmic	58	66	0.78
Transmembrane Helix	67	87	0.84
Non-Cytoplasmic	88	93	0.63
Transmembrane Helix	94	113	0.90
Cytoplasmic	114	149	0.93
Transmembrane Helix	150	170	0.84
Non-Cytoplasmic	171	183	0.76
Transmembrane Helix	184	205	0.81
Cytoplasmic	206	223	0.90
Transmembrane Helix	224	241	0.88
Non-Cytoplasmic	242	253	0.75
Transmembrane Helix	254	273	0.91
Cytoplasmic	274	278	0.75
Transmembrane Helix	279	298	0.86
Non-Cytoplasmic	299	322	0.85
Transmembrane Helix	323	344	0.90
Cytoplasmic	345	363	0.90
Transmembrane Helix	364	384	0.90
Non-Cytoplasmic	385	402	0.84
Transmembrane Helix	403	426	0.86
Cytoplasmic	427	456	0.84
Transmembrane Helix	457	475	0.89
Non-Cytoplasmic	476	485	0.71
Transmembrane Helix	486	508	0.87
Cytoplasmic	509	512	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLADDLAA TAAKAAASPS YKQLKEDFVS NLSGGSVVEI AQVCAVAPVV SLLWSALQAR  60
   61 QTFFKPYNPL AFVVDFLLNV GALLLSVTLY SSVPLLLNIL LLVPAAAVYF SLSDNPSARR 120
  121 KKPQLPPNAQ SKASPGPPGA LSTKPFLTNY RGNMMVVTCI CILAVDFRLF PRRYAKVETW 180
  181 GTSLMDMGVG SFVYSAGVVA SRPVLKERAD GRSTPLATRL VRSLRHSLPL LALGVVRLLS 240
  241 VKGLDYAEHV TEYGVHWNFF FTLGFLPPFV ALFQSALRLV PSYAGLAILL GVLYQVVLET 300
  301 TELKAYILAG PRTDFLSMNR EGIFSFFGYL AIFLAGQDTG MLVLPRSLVP RDGAPGTTGS 360
  361 RRRALVLRLA GWSAIWITLY LLCTDYTYGA GLTVSRRLAN LPYILWVVAS NSALMLSFAL 420
  421 VDTFLFPAFY KAQDAKAEKE AYHTATSRVL QAYNRNGLAI FLLANLLTGL VNMTVRTLDV 480
  481 GRIPTMGILG GYMAVLTGVA VGLDMYNITI KL