YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116182504, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVSSNMGCP APFSFSSCDD AAKGASSGAE PHNRPAARRR HSHFMQRRKS IVNHLMDGEE  60
   61 ALLLKLDLFL TELERRLEYW ENYAELSLDS NISAALETLQ AVRTRCSQAS EEVMGAGRRR 120
  121 LHVMVETLES SYHEALSAAS SLNEKAKVGI ELLDEMLQEM EEQVAKFREK GLANAAESLM 180
  181 DEAHRVVDGG IERAIRAAET LEDHVQRAIA RAREHGLLRY EDLPMPWRTN PHITKGYRFS 240
  241 ETKLACVRSA FSFSNELVNI WSHTIGLVLV LAVAFYFYPT STNFSQSSKA DIFIAAVFFF 300
  301 AACQCLICSV IWHTMSSVAD VGLISMFACV DYTGISLLIA ASIMTTEYTA FYCEPVSRWV 360
  361 YMVTTALLGI GGVVLPWHPR FNGADMAWAR VAFYVALAAT GFLPIVQLSI ARSPEAVFEF 420
  421 YTPIGKSLFV YLLGALVYAS KVPERWRPGM FDYVGGSHNL WHIAVLGGIL FHYTAMQELF 480
  481 AHAFKLARDG CTAY

Type	Start	End	Confidence
Non-Cytoplasmic	1	259	0.73
Transmembrane Helix	260	280	0.93
Cytoplasmic	281	291	0.67
Transmembrane Helix	292	314	0.94
Non-Cytoplasmic	315	322	0.60
Transmembrane Helix	323	346	0.83
Cytoplasmic	347	358	0.58
Transmembrane Helix	359	379	0.93
Non-Cytoplasmic	380	386	0.65
Transmembrane Helix	387	410	0.86
Cytoplasmic	411	419	0.61
Transmembrane Helix	420	440	0.85
Non-Cytoplasmic	441	457	0.67
Transmembrane Helix	458	476	0.90
Cytoplasmic	477	494	0.68