YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116182244, gi...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVARSSLL RQVASARPAF QQSVIARAAR PTAITAFHTT ARRDLLPPLP QHVDGTVNDA  60
   61 APVPEPSPSH GSYHWTFDRL VAASLVPLTV APFAAGSLNP TLDAFLCATI LIHSHTGFQN 120
  121 VIIDYLPKKR VPRTRKAFMW GLNAATAVVG LALYEFETTD VGITETIKRI WTA

Type	Start	End	Confidence
Cytoplasmic	1	75	0.82
Transmembrane Helix	76	96	0.57
Non-Cytoplasmic	97	103	0.56
Transmembrane Helix	104	123	0.56
Cytoplasmic	124	136	0.77
Transmembrane Helix	137	156	0.75
Non-Cytoplasmic	157	173	0.91