YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VMA21_CHAGB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRRIISQE KTLLEKDDSI GSSPAADEKS NIAPAVPTSV IMKLLAFTLG MIVIPIGSYF  60
   61 ATVDSVFNGN STYAGALAAI MANVVLIGYI FVAMAEDQSD QQEGGGPGDG KKDR

Type	Start	End	Confidence
Cytoplasmic	1	39	0.94
Transmembrane Helix	40	63	0.87
Non-Cytoplasmic	64	71	0.85
Transmembrane Helix	72	93	0.93
Cytoplasmic	94	114	0.93