YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88185887, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	55	0.81
Transmembrane Helix	56	78	0.84
Non-Cytoplasmic	79	157	0.59
Transmembrane Helix	158	180	0.71
Cytoplasmic	181	187	0.54
Transmembrane Helix	188	210	0.87
Non-Cytoplasmic	211	218	0.46
Transmembrane Helix	219	240	0.84
Cytoplasmic	241	252	0.42
Transmembrane Helix	253	274	0.85
Non-Cytoplasmic	275	278	0.52
Transmembrane Helix	279	302	0.90
Cytoplasmic	303	411	0.57
Transmembrane Helix	412	431	0.83
Non-Cytoplasmic	432	435	0.55
Transmembrane Helix	436	453	0.41
Cytoplasmic	454	458	0.43
Transmembrane Helix	459	477	0.79
Non-Cytoplasmic	478	484	0.42
Transmembrane Helix	485	507	0.81
Cytoplasmic	508	516	0.49
Transmembrane Helix	517	537	0.91
Non-Cytoplasmic	538	549	0.56
Transmembrane Helix	550	574	0.85
Cytoplasmic	575	594	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKPSPSPHK PRRKAKQAGN SISNIHNVGT VETMSRAPAF PLAAFLWPAR GTVSQWELLP  60
   61 LILMAVGLFR WAAGLWGYSG FEKPPMFGDY EAQRHWMELT TQLPISQWYF HDLQWWGLDY 120
  121 PPLTAYHSWL CGKIGSLIDP SWFALFSSRG LHDPTLKVFM RATVIISEYL IYIPAVVVFV 180
  181 RRYSRLNGVA NWSAAVALVA ILMQPATILI DHVHFQYNTV MLGFVVASMS SLLAGRNLWA 240
  241 AVFFVAALGF KQMALYYALS VFAYLLGSCV FPRINIPRLI AIAGITVVSF AILLLPLVIG 300
  301 ALSDARNGID SRPDIDGPRP PLPLFQGLAD YLDTEAFYYP VVEQLVQMVH RVFPFARGLF 360
  361 EDKVANFWCA LNVVFKIKHY PAELLQRGAL VATLASIAPP NIVLFLRPRK ELLPLAFATT 420
  421 AWGFFLFSYQ VHEKSVLLPL MPMTLLLASS HGLNKSTRAW VGFANILGCW TMFPLLQRVD 480
  481 LAMPYSVLTL LWTYLLGLPP TSLSAYFQEG GNNWTQWVTL FIHGSFYLAM TLWHVLVQAL 540
  541 QPPPDKPDLW VVANVGVGAA GFSLCYVWCL GRLVMQSEIL PRSWFAKKEK AKTQ