YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|88185765, gi|...
Protein type: Transmembrane
Type Confidence: 0.93
Topology Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTASRSSYH PSRRVGSVQS VQNEDRPNRT LSKAARAVAS VSYDDAYSFA LRVAFLRYLL  60
   61 QPRKKRKEYV SAPKPLPRVH TSSVAELVKE LVPSGSASMK LPSGFRHSLE KRMSGVLQGI 120
  121 ERLPGFSDAA VKRTFAEAYT AFTAKDFQKS IDKDRKVEPL VLIFYSAASK AQGRGKPAED 180
  181 HSWKVLVDRH LAMFIRLLSS ILRDKGDIEL VSRLNTLEKK LMSNDQNLYL DTGQQDHSYV 240
  241 EVDIPLSYEV KDMHMVQLVA KIFGVTNSQV QADIDRNTSA WTEEAALKDY KSYQFRLSAG 300
  301 MAGTLRKQDF DVDEAYEDWR RGEAPHLAKI FAEILIARPD LKGGSGGGID KPLPVRHSMY 360
  361 EDQAYADLSR MLSNPESPAP SLDPSFGFGS LTSEETSSIR AADGPSYTFI PPDPRSVYKV 420
  421 ILQYVVSYDQ LHSDTSVSPL SEETSDFLIE LAVRWRIPQF SRYVAFVEVT TRKFLDQELP 480
  481 PEQLYECLDL VKQPLEEPKK PILIQGYTSS LSDIGPSTWT IVDFAGYQQS LKDLHDALLR 540
  541 DLYTLLMRCY EAKPPTVGVV MALLNTHVYP DPAFSQRPED AAEFSQRLDS GLRQQAAQSY 600
  601 RDALDKHIPR SQKEWDFGHV VNLGKAVTEL AEKIKKRYRK NPEIMGVSPF RALVETTLPS 660
  661 FEEDSHEIIK RVLQISKESG IEIDIQDGFD LYRELVDIKK MHVEALPGKP FGFHIEGLLE 720
  721 SFVWRWIKNA DDRMPGFIEE AIKQDAFKVR TRHEGDIPTD DERHSVSIID IFTLFSQTVD 780
  781 QLLQLEWNDE VQLARFTTAL AKSFAGAIGT YCDVAYHQFK HEMDREAEQQ QMAAAQKGTG 840
  841 KWFQYAKDTI NPEKRIEPFQ FYPQSFVKFN NIEWAMQVLD KLGERMNVDA CAEILNRVDA 900
  901 PKQSARRKTT KYVFTVKIVE GEDLKACDAN GYSDPYVVLC DEYQKRLHRT RVINRNLNPR 960
  961 WDEAFDITVD GPLNLIATIW DYDMIGDHDF VGRTSLKLDP VHFGDYLPRE FWLDLDTQGR1020
 1021 ILIRASMEGE RDDIQFHFAK AFRHLKRTER DMVRAVTSKL SMHINLLLSR DSLRGLLSKG1080
 1081 ITASMANLWK KRQSQAPSIT PQEVEEALRP LFTYFDENFA IMKQTLTDAT MMAVMTRLWK1140
 1141 EVLLAIENLL VPPLSDKPSL QKPLTQAELD VTYRWLELLY DFFNAKDHES GEVLGIPVDI1200
 1201 LKSPKWHELV SLNFFYFDTS ENLIRTSERM AAANAQRAQQ QAQQAQQQAH NHHTNNSNRL1260
 1261 SMSSSNMLGV PSMGGASGIG NVPFGSLGTI RRGKSIMMSR NLGTMRKAKE EKRKEAQADP1320
 1321 SDDMILRILR MRPEAAHYLK ERQRQKERMT ASRAAAMILR QSVSQGLAGG GPAFGGALYG1380
 1381 RNSLPSR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle