YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88185429, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.81
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNATQSVPRF LLPRLSWTSP LLTTTSIQGT PAVAFQHTRN TAKGTGWQAT QRRSLHSTNT  60
   61 TTILRICGNA QPTRNPYGIL HNPVLRRSFH ASAPRRRDHH FDTLRFVQRL QEEGFTEEQS 120
  121 VAMMKVLNDV IEESIQNLTR TMVPREEAAK TTYTQKVDFA KLRSELLSAD STESNATRAA 180
  181 HEKLTNDITK LNSRLRDEIG RTQASVRLDL NLEKGRIREE AVSQELKIKE TETKIEQEAA 240
  241 ALRQQLEQVK FQTLQWLMGV CTGFAALLLG HPLLRLEENR FMAGTVWDLE HGALYSIRPA 300
  301 RQSQQ

Type	Start	End	Confidence
Signal Peptide	1	34	0.84
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	252	0.98
Transmembrane Helix	253	274	0.87
Cytoplasmic	275	305	0.91