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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|116180744, gi...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPSNNSPR RHEEYTVAVI CAIGFEMAAV RYMLDREHPR LPPKQGDSNM YVLGELSGHN  60
   61 VVLACLPGNQ GKGAAAVVAT NMARTFPSIE WRFLVGIGGG VPSDKHDIRL GDVVISMPEG 120
  121 QYGGVVQYDL GKDTEDGLRL KGFLWPPPAT LRGAVELMRC DHLTAENKVK EFLSQMLRKG 180
  181 PRLSVYQRPP ADQDVLFNAD YPHVASRSAC ENCDGTKAIS RPPRPCAGTE VHYGLIASGD 240
  241 RVMRSAAKRN ATAYDVGDIL CFEMEAAGIA TEYSCIVIRG ISDYADSHKN DSWQRYAAAA 300
  301 AAAAAKELLS YVTPEQPLDE AMPAPPGQGA LPGRNEPVSQ LLSGQGFQAA GPVTVGRDFK 360
  361 FAQQPDQDAC LTHLRIADPR DEKARIEDTK GGLFKDSYRW ILGHDDFLRW RKEKQSRLLW 420
  421 IKGDPGKGKT MLLCGIVDEL RAGTKLADKK HFFFSRKSTT LLSYFFCQAT DPRINSATAV 480
  481 LRGLIYLLVR QQPLLLSHVW DEYKVTGRAL FEGRDQWVTL SRIFTNILRD ACVGRAYLII 540
  541 DALDECETGL EQLLKLVAQS ASSPRVKWIV SSRNRPDIEQ HLKLDAQMTL SLELKHNAES 600
  601 VSRAIELYID DKVSRLQSLQ DHSLRNHVRH VLRRKADGTF LWVTLVIQEL EKADSWEVLK 660
  661 VVDAMPKGLD ELYTRMMDQI QQRKDPEFCR LVLSAATLAY RPLHLLELGV VSGLPAAIAS 720
  721 SAENVQKIVK KSGSFLTVRE GLVFIIHQSA KDYLQRNPPQ PDPLAPIRYS CVFWADHLSL 780
  781 NGDAPECKKA LTDDGAVFKF LKERFLCWLE SLSLLGKLSD VVSSMRKLLQ VVQTYGSALV 840
  841 FSPAMSEVRC TQWKERLSFI KVAAGIRDHW DAHQQTLEGH SYWVRAVAFS PDGKTLASAS 900
  901 HDRTVRLWDA ATGAHQQTLK GHSDWVSAVA FSPDGKTLAS ASHDLTVRLW DAATGAHQQT 960
  961 LKGHSDSVRA VAFSPDGKTL ASASDDRTVR LWDAATGAHQ QTLKGHSDWV SAVAFSPDGK1020
 1021 TLASASHDLT VRLWDAATGA HQQTLKGHSD SVSAVAFSPD GKTLASASDD RTVRLWDAAT1080
 1081 GAHQQTLKGH IYWVRAVAFS PDGKTLASAS DDRTVRLWDA ATGAHQQTLK GHSYSGAHQQ1140
 1141 TLKGHSDWVS AVAFSPDGKD AGIGLHTISQ SGLWDAATGA HQQTLKGHSD SVRAVAFSPD1200
 1201 GKTLASASDD RTVRLWDAAT GAHQQTLKGH SDSVSAVAFS PDGKTLASAS DDLTVRLWDA1260
 1261 ATGAHQQTLK GHSDSVSAVA FSPDGKTLAS ASDDRTVPAL GCSDRRAPAD AQGGISIGSA1320
 1321 PSPSRRTARR WHRLQTIAQS GSGMQRQART SRRSRGIAIR SAPSPSRRTA RRWHRLSDDL1380
 1381 HIRLWDAATG AHQQTLKGHS DPVRAVAFSP DGKTLASASD DRTVRLWDAA TGAHQQTLKG1440
 1441 HSDWVRAVAF SPDGKTLASA SDDRTVRLWD AATGAHQQTL KGHIYWVRAV AFSPDGKTLA1500
 1501 SASDDRTVRL WDAATGAHQQ TLKGHSYSPS YRHIGDPESL RPSPGTAALL GAAASGDPEF1560
 1561 RIANRHHCEQ SVMFRLVGVA HPHTSRGQTM SVATNAASPA PLSRPTTSQL TRRKSSKDRI1620
 1621 RDILEGARER AESLDPDSAN VGPKLQPLLE RSRRASDPCG SGSLPERNGN GHGVVTSQPE1680
 1681 RQRTLNYQST AETSPARRRS ALSRKSSGQY RGPQTPGRDG GDSGPRERPR ADREEPGWKR1740
 1741 TLRYFKSVEL ENKGSVARDH LALAFASIGI AVTQLFRLNT SLAEDSKQAD RLRHMGKPLG1800
 1801 TAFLAVSILI LLLGYNRYLQ GQNWVIKGKF PASRGTIMLV ALIAFTVTLA SLIVILTVQN1860
 1861 GQT

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