YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88184698, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRTSASAA NGVASKEGAR LDLPTSDKQK ILLSTDAGHF SLIRALHLAD LITEMNGLCG  60
   61 ILSVFSSMRY CVGDSAQHGN LWAALSLLPF GLFFDFLDGK VARWRKKSSM MGQELDSLAD 120
  121 LISFGVAPAA VAFAIGIRTP LDHLCLGFFV LCGLTRLARF NVTAAAIPKD ATGKARYFEG 180
  181 TPIPTTLGLD ALMAWWLSNG WIHDALPGGV WFAGSAFELH PVVLLFMVHG CLMTSRTIHI 240
  241 PKP

Type	Start	End	Confidence
Cytoplasmic	1	50	0.90
Transmembrane Helix	51	70	0.84
Non-Cytoplasmic	71	78	0.78
Transmembrane Helix	79	97	0.94
Cytoplasmic	98	116	0.90
Transmembrane Helix	117	137	0.92
Non-Cytoplasmic	138	143	0.74
Transmembrane Helix	144	160	0.91
Cytoplasmic	161	176	0.79
Transmembrane Helix	177	198	0.83
Non-Cytoplasmic	199	215	0.72
Transmembrane Helix	216	233	0.90
Cytoplasmic	234	243	0.76