YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|116179542, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHMCERESED IKSCIDVELE SSSYLIAPAS LQQTTARHRL ERVSTCSDNK LSVNFGLQLE  60
   61 QNATSGSESY TATPTTNTDE SIIPSQLLLQ FLAWLRLYAF GFYVALFAWK FYDWAQLVEE 120
  121 DTESFWLFLK WIAIDCAFLF GLPELRIPWL ELSQSFVVVA FFFHALFDWL LMFNIGVWIL 180
  181 GFVKVFYDRE LAISEHNVKV SNILHNSSLI MGRQVINILP EGSAVLNPEL HPFCLGGDRK 240
  241 TVPLPIFFNA TIPVEVELIR TDLETNQQET IKLSRVQIRD IERKAKRESQ EGVQSVVQFD 300
  301 YLVKKPGVYQ LGRVLDEYKL EVQRQNPQTF VVPCPKAWVG SVAQGRCVGD LSDLSLRVEG 360
  361 TPPLKIKYSR TINGKDHSFH FQSLQPEGFT SPLGALRSTS MISLDDEDIS WARPQRVPVS 420
  421 LNESMHASGE WQYSVDEVQD GFGNLVKYES SVEDPDAKPK PKHLVQNFVV KERPQVRLEG 480
  481 CDLRRPLKVA KGESKELPVR FKIAGQTPDV TAHTLAWTFS PIDTLTESGD HGDVVTTGTY 540
  541 NAKNARDRPS ISAPGLYTLK SVSASSCEGE VQEPSSCLLL NPLEPKVTLR TEDIPDTCAG 600
  601 NSIGLRVDMD LIGTPPFVVR YDVISNGDRR SERINIPGLR YQMDLIPRVA GHHKYIFTHI 660
  661 GDDIYNRGRR LTGSEYVLEQ DVKPAASALI QHRSGKVSAC LGDEVTTEIL LLGDAPFTLE 720
  721 WEIIHDGKRK QHKATNIQEN TYQIKTKPLT QGGEYTLGLT SVQDKRGCRN FLQEELKISV 780
  781 RRQSPRAAFG QVEGKRKMLA VEGATAKLPV RLTGEGPWRI FYTNTNDGPE DNPKVFERTV 840
  841 RSDNGFLGVD TRGIYTITDV WDNQCHGVVD AKASKFELDW YPRPEMAVPL SHGVRQTDGG 900
  901 FVLEDVCEGD VSGFEVALQG TPPYTVEYEV RHQPLQGSSA LSKRKFDATL GKETIQADTS 960
  961 KAGTYKYKFT ALEDHLYSSA RHFKPLVVKQ KVNRKPSAAF VKPGQTFKYC KSEQDNEDGI1020
 1021 PVALTGVPPF ALEIELKHQS AAVPEIYRTP AINSHTYEIR IPRHQLRLGT QQIRIRDVKD1080
 1081 GSGCHSMAEL GGPAVQVQMF EAPTIYPLET RTDYCVGERI SYTLSGTPPF EVWYTFDGVE1140
 1141 RKARSPTTNF RRVAESPGEF AITTIADKAS ECRAPVRIAK AIHPMPAVRI SQGRNARVDI1200
 1201 HEGGEVEILF EFWGTPPFEF TYTRSTNARK GQKSQVLETR HEVSHEHSKV IRASQEGTYE1260
 1261 VVAIKDKYCA FSTQGAEVGK EKVKGQKVLG Y

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle