YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89334921, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRGKKLLIG VTGGIAAYKA ADVVSRLRKQ GAIVYVAMTK GATEFIAPLT LRTLSANPVY  60
   61 VDMFEEPKVW NVEHIALAEA VDAVLVAPAT ANLLAKMTVG LADDFLSTVL LATQAPIFVA 120
  121 PAMNHHMYHH PATQENLKRL RERSVRILGP AAGFQACGTD GDGRMSEPQE LVEALQSFFA 180
  181 ASGVLAGKKA LVTAGGTQEP LDPVRYLGNR SSGRMGFAVA EALREAGAET ILVSAPNELP 240
  241 TPPGVRRINI MTAQEMHAAV MGEFARMDIV VKAAAVADYR PAVSAEQKIK KAGTNLALEL 300
  301 VPNPDILAEC GRKKENQFLV GFAAETENLY EHAQAKMQRK NVDMLVANDV TQPGAGFGSP 360
  361 TNIVSLLFPD GKKIDLPQMN KLDVARRLVQ EIAERLSEKE

Type	Start	End	Confidence
Signal Peptide	1	20	0.76
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	400	0.99