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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|88184223, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAENGKRQSR EGDDSNMEKA EEKREKSVSD SSSTAGSVHV AKVEKESALA DSDHDQSTSA  60
   61 HPDGGFSSSD FDTEEAKVAV PGHDLDVELA QVSSPFTATM TPWSLSSIPE TDHSPDPQHH 120
  121 GTAAELSRSN TRNSTRSRIS RIISRKRTVE RERIPHAPIP LSNLDEGVVG WESQDDPAMP 180
  181 LNFPSRKKWL IVGLLSGITL LTPFASSILA PGISNLSKEF GNTNQVIGAM TVSVYLLGYV 240
  241 IGPLFLAPLS ELYGRRPVLA VANVFFCLWL IGCALAPSIE SLIVFRFFSG IGGSGCLTLG 300
  301 AGVIADVFRT DQRGSAIGMY TLGPLIGPTV GPVLGSWLSQ TIGWRWDFWI VFIISVIVVG 360
  361 LFELFTTETN PRILIKHKVA RLQKELNRTD LRSCYDTPGA EKQTPTQTLI NGLIRPTKML 420
  421 FLSPTVFFIS LYLAFAYGTL YLLFTTIPTV FQQTYGWSVG ITGLVYICLG VGNVSGWAVI 480
  481 TATSDRGVVK RTRANGGVFE PEMRLPLSIY FSFLLPVTFF WYGWSTYYRT HWIVPVLGLF 540
  541 PFSFGVIGIF LPLMTYLVDS FPVYAASAMA ANTVFRSLVD NLHPNRCMPV FVQLCCLTSG 600
  601 LLTPRCAAWF CKSGMGRTHL QAPRQAGQKP SLPSKYRVMN KTSPSTGTSQ SSMQISPIWR 660
  661 SLPDDLAEQV FALHVNTHFF TDPAYTWTQL RQLSAHQKRV IELRFRAYWL PKLSISLYAS 720
  721 ASHRFDYGMD EAAQQTTTTT TATTATTASL GDDGSVVFSM QRQVHSPLVG ISQDLGLGRY 780
  781 TRTYLRKAWV MYNRVEYRNV TVRLGEGVLS GGCRGGYILN DTHLPGVELL EGGGIRFDWK 840
  841 GAVDELLREE MYMRREGEKM FDAACEEWLA NNPQHLPGTD KEKRGSPPLN IQATSKWLHG 900
  901 QEPDYVPLDA VRRWLFVACP REQPPDIFEV AEVEESVVPM MQIFQTWVRQ QPCAAENDLE 960
  961 KASRDDDMVP THTIIDLYRK EFAWRAWIRY SKRDEHDDRR LDEDTDDEFM DCGQNWTGPQ1020
 1021 ALLLGDEKVR HDVNIRESPK QRKNILIAEI KTSFRDLVNH TAAPVDSTAW TGQTAYNSLA1080
 1081 MGAKMSSIIK STEDLLSLTR KVRELWLIGA LKPPGAQDAA AEQAMQQDAE QVFAMLNALR1140
 1141 DRQRQAMLQQ APGGGFTYEQ GAVDGPAPPH QPSQPQPQSQ PENGVSQGPA QALPNISNGQ1200
 1201 AQQQQPAGAL PRPSVQQL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle