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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|88183876, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPPKPPPKN APPLPDYKTV AAQWAAAKRA KEVADADRLL KGTSSSSTDD GAAAAAAKKD  60
   61 MAQEQERMTA RERTRARLES ARRRAYQSRW GWTAAFWAWL LCVHAVGIAY FTSGFLLTRL 120
  121 VLEEKSACAA PPTGLGGAAG EGAGAGAGAD GGLLPAWPGK GTVEGGCWHP RTFDRAVVVV 180
  181 IDALRYDFAV PVEDDEAFHN AFPFLWETAV REPNRAFLRP FIADPPTTTL QRLKGLTTGT 240
  241 LPTFVDLGSS FSGTAIDEDN LLMQFKDAGK KIVHLGDDTW EALFPGYFEG NLSRAYDSFN 300
  301 VWDLHTVDNG VIEQIFPVME KRNDWDVLIG HCLGVDHAGH RYGPNHPEMT KKLRQMDGFI 360
  361 RDLADTMDDK TVLIVMGDHG MDSKGDHGGE SEDEVEAALW MYSPKGIFGR TKPEYVTPPA 420
  421 TAKTRPVNQI DLVPTLAMLM GIPIPFNNLG RPIEEAFAGA AGNSWANLAA AERTAAAGIK 480
  481 RYQSSYFAAR GIEQSSGPGS PNELWNKAES LISQGKKQDW EAIFSAFAAY QEENLQICKG 540
  541 LWARFDLKNM AIGIAVMALG VIALLVYISK GVDDDAIDDE ELDLAEKSLE LQGVQPDASA 600
  601 TPSDSLERRL ISAALLGATP GFLGGVISSF VSGAGDWYRG SGIAALTSIG AVLVSMYEFQ 660
  661 ETIINLFPRT AWGWMAVVFT VSQSIGFASN SYTIWEDSIL LFFITTFGFV SALSALKIPS 720
  721 KADRYLAIYH SVVFALLGRV ASFSKLCREE QMPYCTSTYY ASSTTSTSAP WQLIIPFLVS 780
  781 VILPSILKAY LKPTRSYEGL APAWIGYVFR TGLFMAALYW LLDAADNGNW IPGLPDKTLK 840
  841 NLNVYTAQMI LGLALVAGTT AFVWAPPCVS IVTSASPSEP TRAQVAILGY ANAHGARYLL 900
  901 LPLNLLAACI LLSKPMGAGA LGLMAWQILA LLEILDLNNL TTSPIGPVIL AVLGTFHFFK 960
  961 TGHQAVLSTI QWDAAFIPLF TIRYPWSPLV VALNTFAGQI LAAAAVPLLV LWKAGPRRRG1020
 1021 VLEAVSRALG VFVTYFAVES LATMAWAGHL RRHLMLYRVF GPRFMVAAVV LLVVDVVGIV1080
 1081 VSLAGVRCNT VAIGEVFGWP E

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle