YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88183830, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPTENLNL DVEAISGICG SISIACWVVV FSPQIIENFR RGSAEGLSIQ FVVVWLLGDV  60
   61 FNILGAVLQG VLPTMLILAI YYTIADIVLM VQCFYYRGFT LRDDVTPPAA PPPKSKRNGN 120
  121 GNGNGHHHPG EPSERTRLLA GGRGEGAVSS DNPERSLYHE DHERRGSWTH LSPAVPFVNE 180
  181 EPETMPAPPP TTWTQAVAFN SLAVFMVCAA GVAGWWLSRT YGRGGDGDGK PPSDGQQDLL 240
  241 EFNMLGQVFG WLCAVLYLGS RLPQLLLNWR RKSTEGVSVL FFLFACLGNL TYVLSILAYE 300
  301 PKCAGEEGCQ RGEAAQIFWQ YILVNLSWLA GSAGTLLLDM SIFVQFFVYS KTEDDQVSDD 360
  361 DESTDEEESI VVPLPSPSSE PSAAAGLPFV ISFITPGHAD VYDPANRPYT TQNTYNTGRF 420
  421 TDRPHSKNVP TAAPTADTIK HLVTSNRSIN HPIATHPAQL ATFTNIIATT DGTGLAPSTA 480
  481 RAYDGK

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.81
Transmembrane Helix	14	31	0.93
Cytoplasmic	32	46	0.75
Transmembrane Helix	47	68	0.85
Non-Cytoplasmic	69	76	0.61
Transmembrane Helix	77	96	0.89
Cytoplasmic	97	195	0.96
Transmembrane Helix	196	217	0.93
Non-Cytoplasmic	218	243	0.88
Transmembrane Helix	244	260	0.91
Cytoplasmic	261	276	0.76
Transmembrane Helix	277	298	0.90
Non-Cytoplasmic	299	321	0.87
Transmembrane Helix	322	343	0.79
Cytoplasmic	344	486	0.89