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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|88183751, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.51
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEPTVPPAA ALAGLRPSAT MLAPTTSSGP SQPSQPSSSQ PSQQSQPQLQ PQLPTPPSHT  60
   61 GPAIPVTLNE AALDSPTFRA TAVHFSDQLD AIERWLENYV RSTSKLVHDV LALEDSVGSY 120
  121 LSKISPPTIA SPVDSHVLDA DYTVPALRRA ADGARDWWGG ILAVVRRLEP ASVEPIRAYV 180
  181 QGELRTFRET RRILEAAQKT FDATLARYVG QSKTKEPSSL REDAFAVFET RRAYLKASLD 240
  241 YCQMAPQVRA GLDKLLVRVC ADVGREMRRT GGQAAGLGGQ NAWGSELERI RGWAREMEMT 300
  301 ESVFKREAQI ARRDIGESTL AVYKPSRELE DYSISTVPFL GSKGPMSIQR GDQAAVISEK 360
  361 QGWLFLRVLS GKPVRTAWTR RWYYCRDGIF GWLIQGPQGV LQGDEIGVLL CSARPAVQEE 420
  421 RRFCFEIKTK TQTIMLQAET QAQLIEWLEV FEVAKKKAIE ASMGRDQSSL LGGTDPAFSI 480
  481 TPPSIPEFSA KMLDNLDEAS VVERQTTLPV PGPDGNMVRA SFDAPPRRAI TTHLGREDGE 540
  541 SGREHAARIM QKLDLHRKSA FTGSMDPSSA GTGASMTSST ATSPHLGYPP PLRVPNSLLD 600
  601 QTPGSLAPIT LARPPVATNL SKTAILASAN AGASRGLPSA VLANYWGSSP YTSMYCPTPS 660
  661 IPNTPKPDMS DPFVATAMPR TPTVEKLPTP ANSHRKTVSV DATAADIRIR EQAPSEKFPL 720
  721 NYPPELRAQY AQFRLFFPTA LPDDKPVLVF NAAWSSASPD SKDAGMAGNG RIFVTPDRMY 780
  781 FYGHQMGLVV AYAINLDSIT ELTAAPGRDC DFIFLHLNQD MPDITYSRIT IKVFLEDFSL 840
  841 LQSRLNLLVD DLQAAEPMEL SEIIATLSTL NKEQDDKRSP SVESWEEVSS NTPADNGTPF 900
  901 GRPVLRRGQD SHGRNRSRGL KKSNHKLQLP THPVTYEPQG MGKSVAERHF EISAKSCFHV 960
  961 LFGDKSFILP KLYFERGAKD ITQGPWELKD HGLMKRQFRF KVDYVDMLGR KKPVDVTDSQ1020
 1021 TIDIFNDHIT YVVTHIKTPW HLPHSHAFKL VTKVVITHLA KSKCKLAIYT KADWSKTPAF1080
 1081 AWKNMVQRQA LDDAANDADE VADIATEQVR KLGPHSRTKR AIQVYGNIGQ QTQIVVFSPD1140
 1141 TTPEGQQLLQ KSGTAAVRPR TLTDMMLETG RSFMESAITS VMMWAFAAVR RIFKIVTANR1200
 1201 LILLLLAASA AYNLVVISQA SSTWWVERKS ARYMSRLGVG PNLMMSKAIY LADLDEAAGN1260
 1261 SNNTMAPRKD GGSQCYTTFQ TLLNATTLSL DAPYQDAGRA GAGAGTTEFG SATSRATARR1320
 1321 VRRVRQRMGA YRHDLLVAMR VVNKVEREML HAEWESWLAG GD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle