YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88183613, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGSEPFPP LSMAANRQFQ STTADNNAPR RRRKSSILGS ELRLGDTGAP SIATGIAHLS  60
   61 GKQEPALSPA TPSKRFSKRR KARSALRRAK SIAVKHTWVL PLVILFAFLL LYVVNPTESN 120
  121 PIHHFIFLSY RLPVSSPDEL PQYGKGLWDI AFVSFYTVVL SFTREFIMQE ILRPLARYAG 180
  181 LNSRGKQARF MEQMYTALYF GILGPTGMYV MSRTPVWYFN TRGMYENFPH QTHDAVFKFY 240
  241 YLFQAAYWAQ QAIVLLLGME KPRKDFKELV GHHIVSLALI GLSYRFHFTY MGLAVYITHD 300
  301 ISDFFLATSK TLNYLDHWLT GPYYFTFMCV WIYLRHYLNL RILFSLFTEF KTVGPYGVNW 360
  361 ETQQYKGTLS FVITLALLSS LQALNLFWLF FILRIAYRFA VHNVAKDDRS DAEESELEET 420
  421 AAPAVNGKAA AVANGTAKSY AATAAVDAAT NGAAKKRK

Type	Start	End	Confidence
Cytoplasmic	1	92	0.99
Transmembrane Helix	93	114	0.90
Non-Cytoplasmic	115	146	0.94
Transmembrane Helix	147	167	0.90
Cytoplasmic	168	193	0.93
Transmembrane Helix	194	216	0.84
Non-Cytoplasmic	217	238	0.91
Transmembrane Helix	239	259	0.89
Cytoplasmic	260	268	0.94
Transmembrane Helix	269	288	0.88
Non-Cytoplasmic	289	313	0.82
Transmembrane Helix	314	334	0.74
Cytoplasmic	335	341	0.52
Transmembrane Helix	342	358	0.32
Non-Cytoplasmic	359	368	0.44
Transmembrane Helix	369	392	0.87
Cytoplasmic	393	458	0.55