YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116206610, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSEDRSKP ISIPGNNNRW EGASTDSEAI LTPELSGSPP DDDSHEHAVV TPTLGPTVPT  60
   61 SPRLSRNPSF SGSSSYQEDW DPFPPLDRLT VLDILDNFAL SQQLEKLQKG ISAQTEKVRK 120
  121 SRQAFGNKSR IARERMVDEW RRRVPSAEEQ LDRYRKRMRT SVEKLGSRWN DTKAITLREK 180
  181 ISFICGVMNI FVSGYLIGGY PEYFHLWYTI QVLYFMPIRF YTYHKRGYHY FLADLCYFVN 240
  241 FLLMLSIWAF PNSKRLFTAV YCLAFGNNAV AIIMWRNSLV FHSFDKVTSL FIHIMPCATL 300
  301 HCIVHLIDPA AQQARFPAIW TIKTSPAGSS TAYANVFSML AWSSIPYAAW QLMYYFFITV 360
  361 RRREKIAAGR PTSFTWLRKS YSKVWIGKIV LGLPSALQEP AFMLIQYIYA VLTMLPCPLW 420
  421 FFSRWASSLF LIVVFAWSVY NGSTYYIDVF GKRFQKELEA MKAEVAKWQH SPDVWPHEDG 480
  481 SGTAVVSPVA SPAAGASTTG SLADGISGKR LDDDMRGVSG VDNIPLLNDE RPAAVLATGA 540
  541 DMDMDGGARD VARERRMGSG ESR

Type	Start	End	Confidence
Cytoplasmic	1	180	0.98
Transmembrane Helix	181	198	0.94
Non-Cytoplasmic	199	203	0.78
Transmembrane Helix	204	223	0.80
Cytoplasmic	224	229	0.78
Transmembrane Helix	230	250	0.94
Non-Cytoplasmic	251	256	0.76
Transmembrane Helix	257	279	0.88
Cytoplasmic	280	288	0.75
Transmembrane Helix	289	307	0.91
Non-Cytoplasmic	308	337	0.79
Transmembrane Helix	338	358	0.87
Cytoplasmic	359	383	0.87
Transmembrane Helix	384	410	0.65
Non-Cytoplasmic	411	424	0.54
Transmembrane Helix	425	447	0.77
Cytoplasmic	448	563	0.85