YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88183104, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATQRTSNGV ANGHNGQNGQ NGHNGTNGHS GFHSDSEPDS ISTDASDVSL ESIDSVNGTT  60
   61 TNGTSSSKVN PRRRKRKQSS PMMPAFMVSA PGKVIVFGEH SVVHGKAAIA AAISLRSYLL 120
  121 VTTLSKSKRT VTLKFPDIDF DHCWNIDELP WATFQQPSKK KYYYSLVTEL DPELVAAIQP 180
  181 FLANVSPDKP AGIRKVHQNS AGSFLYMFLS LGSQSFPGCQ YTLRSTIPIG AGLGSSATIA 240
  241 VCMSAALLLQ LRTLAGPHPD QPADEARMQI ERINRWAYVY EMFIHGNPSG VDNTVATQGK 300
  301 AVVFQRTDYG KPPSVRPLWD FPELPLLLVD TRVPKSTAHE VAKVGKLKNT HPVLVGSILD 360
  361 AMDKVADASA EVLTEEGFDT QSEASLARVG ELMTVNHGLL VSLGVSHPRL ERVRELVDHE 420
  421 GIGWTKLTGA GGGGCCITLL KPGVERKKLR KLQAQLDEEG FEKFETTLGG DGVGVLWPAV 480
  481 LKNGMDEDDQ GGMEIDLERF LSAEGNEGVE KLVGVHGGAG EREGWNFWRV ES

Type	Start	End	Confidence
Cytoplasmic	1	79	0.77
Transmembrane Helix	80	97	0.55
Non-Cytoplasmic	98	104	0.60
Transmembrane Helix	105	120	0.55
Cytoplasmic	121	226	0.64
Transmembrane Helix	227	249	0.75
Non-Cytoplasmic	250	532	0.54