YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116206108, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	46	0.81
Non-Cytoplasmic	47	77	0.93
Transmembrane Helix	78	100	0.94
Cytoplasmic	101	110	0.79
Transmembrane Helix	111	130	0.93
Non-Cytoplasmic	131	139	0.87
Transmembrane Helix	140	161	0.91
Cytoplasmic	162	171	0.80
Transmembrane Helix	172	190	0.92
Non-Cytoplasmic	191	198	0.75
Transmembrane Helix	199	217	0.78
Cytoplasmic	218	279	0.86
Transmembrane Helix	280	300	0.88
Non-Cytoplasmic	301	306	0.67
Transmembrane Helix	307	325	0.90
Cytoplasmic	326	336	0.72
Transmembrane Helix	337	352	0.90
Non-Cytoplasmic	353	358	0.83
Transmembrane Helix	359	379	0.93
Cytoplasmic	380	390	0.84
Transmembrane Helix	391	409	0.97
Non-Cytoplasmic	410	416	0.89
Transmembrane Helix	417	440	0.85
Cytoplasmic	441	456	0.90
Transmembrane Helix	457	478	0.92
Non-Cytoplasmic	479	499	0.88
Transmembrane Helix	500	517	0.95
Cytoplasmic	518	524	0.71
Transmembrane Helix	525	543	0.93
Non-Cytoplasmic	544	548	0.69
Transmembrane Helix	549	568	0.92
Cytoplasmic	569	575	0.84
Transmembrane Helix	576	598	0.89
Non-Cytoplasmic	599	612	0.85
Transmembrane Helix	613	631	0.95
Cytoplasmic	632	651	0.92
Transmembrane Helix	652	672	0.90
Non-Cytoplasmic	673	963	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPRYKDKD AGVVLSFSGQ WVSWSHTAVA YLAFLSALIV GSALHYHKIV QNEWYGYPDE  60
   61 WFPSVSATIG DRYPERSIFM IFIAITSGPR FALVGLWYLL TAKPGRTLPK VIAISGVIRT 120
  121 LTCGGWTYIT STDDHDWHDI LMIAYIVFTI PWTTGCIALS PANAKAIKYR KYLAGGFFGT 180
  181 LVPLVYFFIQ HKVHRVAGAY TIYAFFEWSL ILLDVAFDAV TALDFDTFEV VIRDVKGASK 240
  241 GANKSSVPAA VLEKEKEKAT AGVFSAGFRL SEALDIAADV YHGFVFWSIL TSLGVTVWYF 300
  301 PLWHMGISGF EALIMTTVAP AFLAIKPFRS LVVKNQRVVH LLSLSGLVAY LIEDPTCRLF 360
  361 AVGLGVSLTC LGWAATLFSD SVQPARLEMR VLAWVIGLLM SSVAKFAWYT NNPIWPIMHA 420
  421 ANGGWNGTGL VLAVLATLRF TRHAPLQGGH PVEAKGGSAL LSAFGIGGLF FGLHSLLSDT 480
  481 STMILWVWDG YPIRGPVSNV HAWYTIAAMT AGVFAGFSRP ALVTTWTAYG VGCVGAAVLT 540
  541 LYHQWLGYYG ALALAAYLMA ISVPLISSAS KKSPAVVFGL GFLIYNFVVL FHVWVVAYAF 600
  601 VPGGPLVRER TDWVNMTMML LIGAGVFDLI SQQAKSKQAA PRRATNTNHR KYHLGALGIL 660
  661 NVLFLCANFL RFPTNDYKPY HAEDRVLTAG IWTIHFSLDN DMWSSEYRMR DLIKELEVDV 720
  721 VGLLESDLQR IIMGNRDTTQ FLAEDLGMYV DYGPGPNKHT WGAALLSKFP ILNSTHHLLP 780
  781 SPVGELAPAI HATLDVYGSL VDVFVFHSGQ EEDPEDRRLQ SEYLAKLMGS SPRPSILLSY 840
  841 LVTNPLEGNY NTYVSDISGM HDVDPTDDDR WCEYILFKGL RRTGYARVSR STITDTELQV 900
  901 AKFVVPATDS DSASTWNAPK TLRNRRIPEE EVSEGLRFPA MFKGEGVRGH QYHVFDEPRY 960
  961 YSF