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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|116205778, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTQLRFGGD LEGLRDSLDY IAGMGIKALY IAGSPFMNLP WGADSYSPVD LTLLDKHFGT  60
   61 IKVWQEVIDE IHARGMAVVL DNTMATMSDL IGFEGFLNES TPFRVEEHRV MWKTSRRYLD 120
  121 FDISNEYNSS CNYPQFWYED GTRINPPGLQ GCYDSDFDQY GDIEAFGVFP DWKRQLAKFA 180
  181 SVQDRLRDWE PSVAARLELF SCMAIRMLDV DGFRIDKAVQ VTVDAQASFS SAMRKCAKEV 240
  241 GKDNFVVFGE ITSGNDLGSI YLGRGRESQA AKTLKGDWTK AMTMTPPSTD KSGMFIRDAG 300
  301 NSALDAGAFH YSIYRFMTRF LGLSGNLEAG YDLPLDWVDA WHHMVVTNDF FNPYTNEFDP 360
  361 RHLYGATNQD VFRWPAIEQG VERMLLAYFI TTILLPGAPL VYYGEEQALY ALDGTASNYV 420
  421 YGRQAFAPSP AWKAHGCFEL SVDQYIGWPI TKGRKGCEDE KVAWDHRDPS APLRNIFRRM 480
  481 FALRDAFPVL EHGWLLENLA KQTESYPLNG STVETEFGVW SVARGMFTQL QNDTDKPVWL 540
  541 VYHNRPNRTT YNFVCTDINK AFVSPFDAGS DVVNLFGQDK SIRLESSPRK NNFTGTGASA 600
  601 GCIPSITLEP YEFRAYVEAT SWVQPAPMIT KFEPGHDFPI DSTDRNGELG EIAIEYNVQM 660
  661 NCDSVTKALS AVVVTDGKHN ATTLKFQTPK CEKITPAEKI PYTGAVQSSW RLTTSLRDVP 720
  721 DGIVKITVAN ALSEDKVPTN ATDHFLIRFG KRLSNPIIFP TANYSRTLLS MEGSAIKPLG 780
  781 SSAFVQHADS SDVQLERGFP HIRIHGPYNK WGYDAGLPGS MDLVAHRTWS LHYMYEWPAN 840
  841 FQLNIWGINP DNQPDVGAIF GDIDNDGIVD RLPPSSLAKN VINITKPPPM PALAYKLVYY 900
  901 DDKFQFEYLP TGHVGIQILL FILLTVLPLL LAILAGWVYM RSFYQVKVNK SGFTSKGWKP 960
  961 LKLGTVSRLD LKSFTKRGVE MSAMTPTPPP SAAMTPLGAS GGRRTVLIAT MEYNIDDFGI1020
 1021 KIKIGGLGVM AQLMGTALSH VDLIWVVPVV GDVDYPTDRM TRAESMFVKV MGQPYEIEVY1080
 1081 YYTTKNITFV VLDCPIFRKQ TKADPYIARM DDIESAILYA AWNSCIAETI RRFPVDVYHI1140
 1141 NDYHGAAAPL YLLPQTIPCC LSLHNAEFQG MWPMRTPEEQ KEVCEVFNLP PEVVKDYVQY1200
 1201 GSVFNLLHAG ASYLRLHQRG FGAVGVSRKY GDRSLARYPI FWSLKNIGQL PNPDPSDTAE1260
 1261 WNPDKDVSKQ SKGIDVDQGF EEKRGDLRRQ AQEWAGLEVD PTAELFVFVG RWSLQKGVDL1320
 1321 IADIFPSILE KYPKTQLIAV GPVIDLYGRF AALKLQKLME KYPKRVFSKP EFTQLPPYIF1380
 1381 SGAEFALIPS RDEPFGLVAV EFGRKGALGV GARVGGLGQM PGFWYTVESM TPSHLLQQFR1440
 1441 QAIVSALDCK SSKRALMRAW SAKQRFPVAQ WIKQLDELYS ESIRIHNKEA RKKKLDALRA1500
 1501 PSPNPSRPSS PASEATYVEQ GSAIYSPGPE THLVPPSPSA SPAPRSVISP DLPSPSAPWL1560
 1561 GGTRSSSPRD STVSSLAGSI YGNNAAREST VSVDSFAVRA QKDGMASPGL TPNFGLAPPR1620
 1621 PTLGQSHRNS SLLSLPDVVG DRHDLKLQQV DQFFNDSNGE YYAIILSIRL GDWPLYSFLL1680
 1681 ALGQIISVSS YQIVLLTGET TQTPEKLYMV ASTYIATSLI WWGLERNFKS VYALSIPWFF1740
 1741 FGFAFLLIGI APFIPDWRVA NKLEDAATCF YAAGASSGAL TFALNFGDEG GSPTKQWITR1800
 1801 ALTVSGFAQV YSIGLWYWGS MVANTDPTAT VFVGTSNVPQ AIVVGVPIAV IFWAIGVVLY1860
 1861 LGLPDFYRQS PATIPGFYIS LYRRKIVPWF FVMIILQNYW LSAPYGRSWQ FLFNTQHVPG1920
 1921 WGIFLLALGF YCALWALVLY GFSYFSDEHT WLLPIFAIGL CAPRWAQEFW GTSGIGWYLP1980
 1981 WAGGPMGSAI VSRCLWLWLG LLDNIQGVGL GMMLLATLTR QHVLTVLIGA QVVGSAFTML2040
 2041 ARATSPNALS PHTTFPDFSQ GVMPGAASPF FWVCLLFQLI IPIGFFKFFR KEQVSKP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle