YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88182614, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPHLWRLLWP CFRADGNTPS PHIPLHPGLR QQQLGAREPR KLQSGNWTDS IAQHIATLND  60
   61 ALSAAKMSNP TTQTYQWPSK TVKTDYPLID NDPHFMRVVR YARTSDYVHG VAAGVAGPGL 120
  121 LYAMERFAPS QVGKGGFAQA MRLAGFIGLT GGFLYYYQRS ILRFYGMSEN AREVQMDMRE 180
  181 MVDKVKAGEP LYGESKLTPA MQGVAARQSR YSALFFGVLP WFNFVNHSQH GVDTAKYYQQ 240
  241 AERELEAERL AKGSS

Type	Start	End	Confidence
Cytoplasmic	1	104	0.95
Transmembrane Helix	105	124	0.87
Non-Cytoplasmic	125	137	0.81
Transmembrane Helix	138	157	0.92
Cytoplasmic	158	255	0.86