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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|88182545, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSASSKPP AVRASSPPAA SDIGQKPKNK AAKRKDDYSS EGVEDNDVFL LPGADFQLVI  60
   61 AITVLAAAVR LFRIYQPTSV VFDEVHFGGF ATKYIKGKFF MDVHPPLAKL MITLFGWAAG 120
  121 FDGSFDFKDI GKDYLEPGVP YVAMRMFPAI CGILLAPTMF LTLKASGCRT FTSVMGAGLI 180
  181 IFENGLLTQA RLILLDSPLM IATAFTAFAF TSFTNQQELG PSRAFGLSWW FWLVMTGLGL 240
  241 GMTVSIKWVG LFTIAWVGLL TLVQLWVLLG DYKTVSTRIF AKHFMARLFC LIVIPVTFYM 300
  301 AMFGIHFLCL QNPGDGDGFM SSEFQSTLNS KGMKNVPADV LMGSRVTIKH VNTQGGYLHS 360
  361 HPLMYPTGSK QQQITLYPHK DDNNLWLLEN QTQPLDIHGQ PINGTNAWYN IPDTPYIENG 420
  421 AVLRLYHLPT HRRLHSHDVR APVTEADWQN EVSAYGYEGF DGDANDFFRV EIVKKKSKSG 480
  481 IAQQRLRTID TKFRLVHVMT GCVLFSHKVK LPEWASEQQE VTCARGGTLP NSLWHIESND 540
  541 HPKLGPDSET VNYANPGFFG KFWELQKVMW KTNAGLVDSH AWDSRPPSWP ILSRGINFWG 600
  601 KEHRQIYLIG NPVIWWSATA AIVIYVLFKG IAVLRWQRSC NDYAIPVFKR FDYEIGTSVL 660
  661 GWALHYFPFF LMQRQLFLHH YFPALYFGII AFCQIYDFAT TRISGIGLKE NPIIGKAGAV 720
  721 GFLVLSMVAF TLLSPLAYGN PWTKAECKRV KLFSTWDWDC NTFLDNYDAY SSLPSTPAAA 780
  781 QTPQKSVAAQ KAPPAAAGGQ QAQVPIADAQ QQEGKADVSG APVADNKRLL HTEERVEYRD 840
  841 QDGNLLNEEQ VKALEGKVEF KTRYETRTRV VDAQGNEILL PADELPAEVQ QQEQPAAAGV 900
  901 APPHPDVEGA NSETMKRVVP DEPIPEPKKS VEGEKEREGK AAKPASEKNE ASAKVDEL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle