YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88182542, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASASVARSA MPGGPGKSIS HTDAPLTQSR ETGDVNPESR QGTPIVNRDK STKAQNPWAH  60
   61 LVAGGIGGMT AAALTAPLDV LKTRLQSDFY QAQIRASRAS IAAPMNPFRT AAFHFNETMS 120
  121 ILGSVYRQEG PRALFKGLGP NLVGVIPARS INFFTYGNGK RIIGEYFGNK DSPWVHLTAG 180
  181 SISGVVTSTV TNPIWMVKTR LQLDKNMAIE SGGIAKRRYK NSLDCIRQVL RDEGIRGLYK 240
  241 GMSASYLGVA ESTMHWMLYE QIKRSLVRRE ERIALSGRSK GWWDHTVDWT GKFGAAGFSK 300
  301 FIAAVITYPH EVARTRLRQA PMADGRPKYT GLIQCFKLVF KEEGMLGLYG GMTPHLLRTV 360
  361 PSAAIMFGMY EGILRLLRTS A

Type	Start	End	Confidence
Cytoplasmic	1	57	0.78
Transmembrane Helix	58	78	0.71
Non-Cytoplasmic	79	381	0.66