YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88182254, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALEGSPPGC RSGHSAQDRD DVRTFGRRRR RILEVAKGPC VSVSLLEALP SPRNLYCGAS  60
   61 TQYGGYRQKF SKWVRYWQGL WAGAKQSPRS TSCCQSASRA AVNSNITSFA MSSELPSTPP 120
  121 SHHSKSAHLS RDERLQVQTL RKCGFTYEQI VAQLGFTYNQ VGHACRAPNI TPKKRSGRPG 180
  181 LLNPEQIEDL IAFITSSKAT RRMPYSKIPA ALGWDCSDCL SGVQSRGAAP NEITKNTSLS 240
  241 RTLWQSTIKH HARASHLFAM ESNKEKDMRQ PDLIIPYQEP AAKGDNVEFQ STISSTLPMA 300
  301 AIFMRNKYVG WAAVVFSIQS WLGESEETKK SSSTPGYFNV GMSVVSLLVT YLPLFLPPPG 360
  361 TKSGSPTGAP APLPV

Type	Start	End	Confidence
Non-Cytoplasmic	1	307	0.71
Transmembrane Helix	308	322	0.32
Cytoplasmic	323	334	0.44
Transmembrane Helix	335	355	0.65
Non-Cytoplasmic	356	375	0.73