YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116192375, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLASALQLP YREARDGFWG EQTSTLNWCE EDYNISFYCA EVVNTLTNLV FMWLGIKGLR  60
   61 NVLAYAHSKV FVLAFLGYIV VGLGSMAFHT TLKYEMQLAD ELPMIYTVCI MGFATFSYRR 120
  121 PAKVQALIAA GLVGLAVFIT VYYLVAKDPV FHQVAYGLLT ASTIFRGFYV MEKHLRPKLS 180
  181 QRKPAECERY MRGMYTLALT GIFMFLAGFF LWNMDNIFCH HLTATKKQIL LPWSVVLEGH 240
  241 GWWHILTGLG IRLSLMLVNA NFEPMLRFGV DPYYRTTTAP LRRTQHRQIR TIHITSDNSR 300
  301 FLRHYTPNPS LSPALFRVPS VNMSISNEAL QKLVREIESQ AAAAQQQISL VRTQTASKQR 360
  361 EMRLAQLTRS EIAALPSDTA VYEGVGKMFV AIPVPTLQDK LGSQIKGIET EVDSLGKRLH 420
  421 YLETTAKNSQ DHIEKMLRGA GQQ

Type	Start	End	Confidence
Cytoplasmic	1	69	0.71
Transmembrane Helix	70	90	0.91
Non-Cytoplasmic	91	98	0.81
Transmembrane Helix	99	118	0.88
Cytoplasmic	119	125	0.83
Transmembrane Helix	126	146	0.94
Non-Cytoplasmic	147	151	0.85
Transmembrane Helix	152	170	0.96
Cytoplasmic	171	190	0.96
Transmembrane Helix	191	212	0.95
Non-Cytoplasmic	213	239	0.96
Transmembrane Helix	240	260	0.89
Cytoplasmic	261	443	0.97