YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88181734, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTSAALGRG APSVRFGKTG LYAGVTRGGG GSLNLGGVRY LTSGRQWQQT GNVLSSSVSS  60
   61 GRFGKEAGLG PAMGVCLHAQ ARWFVVSSRW RRDGEKVTGS EKSPIPAPAK QGPASALSKI 120
  121 LPKANLRHEN IYTIPNILTA SRLVAAPFIG YCILHDYHAA ALGLFAYAGI TDALDGWIAR 180
  181 RWNLGTVVGT VIDPMADKTL MTVLTVALAV KGALPVWLAV IILGRDVALA ISAIYYRWIS 240
  241 LPPPKTFARY WDFSLPSAEV HPTQISKYNT VLQLGLVGLT TLAPVVPAVD MSSMLGIMHY 300
  301 VVATTTVWSG ASYIYSKDAV KILTPQQAEE KKAEQEKQDS R

Type	Start	End	Confidence
Cytoplasmic	1	137	0.70
Transmembrane Helix	138	170	0.59
Non-Cytoplasmic	171	201	0.46
Transmembrane Helix	202	236	0.62
Cytoplasmic	237	269	0.63
Transmembrane Helix	270	289	0.66
Non-Cytoplasmic	290	295	0.59
Transmembrane Helix	296	315	0.69
Cytoplasmic	316	341	0.81