YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88181705, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPTIRTLE DCADFSMAVR PFIPHLYGLP AKLLDAFSGR ESLLQLYTET NPLVSGFAIS  60
   61 VFLGAVFLVA AEINRNYSQV DRFWSLLPTL YIAHFDVWAR LAGLPSQRVD AALFCSAVWS 120
  121 IRLTFNYWRK GGYGIGHEDY RWEVIRQHVP KAVFHVFNWT FISFIQSILL FMIAAPVYTI 180
  181 LLASTIDPDV TSADIAAAAV QLGLVLTEYI ADEQQWGKPN PSPRGEKTEQ PTLTIGPYLP 240
  241 NLVYQSAKKQ YKDTGKVTRG FTQADLDRGF ITTGLWGYSR HPNFAAEQTI WFVLYQWSCY 300
  301 ASKTLYNWAG AGPAFLVLLF QGSTWFTELI TAGKYAGYRD YQQRVGMFAP SALSAYRSSP 360
  361 AARVPKVIRT SELEKKLREK EKNQKQK

Type	Start	End	Confidence
Cytoplasmic	1	51	0.55
Transmembrane Helix	52	73	0.85
Non-Cytoplasmic	74	82	0.44
Transmembrane Helix	83	98	0.53
Cytoplasmic	99	155	0.51
Transmembrane Helix	156	182	0.79
Non-Cytoplasmic	183	387	0.52