YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116196400, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSTSKVPV AQADTFPDGT TDHVPLRKKT YDLRKPHITD QPITWANWYQ HVNWLNTYFI  60
   61 VMVPMVGLIS SYWVSLQLKT AIFAVAYYFF AGLGITAGYH RLWAHSSYKA SLPLKIFLAA 120
  121 GGAAAVEGSA RWWSSLHRSH HRYTDTEKDP YSVRKGLLYS HIGWMVMKQN PRRIGRTDIT 180
  181 DLNDDAVVVW QHRNYLKSVL TMAIIVPILV CGLGWGDYWG GFVYGGILRI FFIQQATFCV 240
  241 NSLAHWLGDQ PFDDRNSPRD HVITALVTLG EGYHNFHHEF PSDFRNAIEW WQYDPTKWFI 300
  301 WTMKQLGLAY NLKTFPQNEI EKGRVQQQQK KLDQKRSTLD WGIPLESLPV VSWDDFVEES 360
  361 KNGKAWIAIA GVIHDVGKFI ADHPGGKALI SSAIGKDATA VFNGGVYSHS NAAHNLLSTM 420
  421 RVGVLRGGCE VEIWKRAQSE NKDVNAVTDS SGQRIVRAGD QITRIGRPIT TADTA

Type	Start	End	Confidence
Non-Cytoplasmic	1	53	0.61
Transmembrane Helix	54	76	0.89
Cytoplasmic	77	82	0.53
Transmembrane Helix	83	103	0.92
Non-Cytoplasmic	104	111	0.55
Transmembrane Helix	112	133	0.81
Cytoplasmic	134	198	0.71
Transmembrane Helix	199	219	0.89
Non-Cytoplasmic	220	226	0.51
Transmembrane Helix	227	248	0.65
Cytoplasmic	249	475	0.54