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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|88180676, gi|...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.42
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVVNSTARA AVTSATAVTA VTGTGDRHPN PLSSAVAAAS DVANAHGSSS WLGLFARVVL  60
   61 WLLQFVSMVL YYAIKLATIS VPTLLYTLFS TSLTVTMNAT TLMLIVAAMI GAISWVVRYR 120
  121 YLNMYSRLPP EPQRKEPDVD LFPDTHEEGI KSGLSNYFDE FLSAIKIFGY LERPVFHELT 180
  181 RSMQTRKLIA GESFNLEEEK GFCLVVDGLV EIFVKSSSYN RRYPHGPYFS PNSEAPSSDD 240
  241 EHPAPGQQRY QLLTEVRNGA PMSSLFSIMS LFTEDVPLRH ADEDNSEPGT TTHSGLFPNY 300
  301 PASADFRKSR VRMDSVPNTP QMDASASSSA NNLPGQLDRG LPHVPPISLD GTGFSKPQRP 360
  361 VPKRSNTTSA HPDIIARATV DTTVAIIPAS AFRRLIKIYP KATAHIVHVI LSRFQRVTLA 420
  421 TAYNYLGLTN EVLQIERQML KYTTQQLPNH LRGDALDRLK EKFKREVERM GEEDDVSKGI 480
  481 ALHNARAGRR RRSTATLRKE AALQAFSKQR NISSMSGSSL AIPNAGDLVT HLQQSRGGGN 540
  541 RAQSVAFTDG PSPHLDVERE AVSPLAQRTF DPFVTPRSIH VALEKRETLD EDNLFRESIL 600
  601 ECMFRSIGLT GSGGSNKDAD SNQASPRLIS FDQRRQKALY TNHAFGFMDG LDGSADGDTE 660
  661 SITSAGLSLP ASPNPQFLAQ EMRDEMEIVF FPKGSVLVEQ GERNPGLYYV VDGFLDICTQ 720
  721 EDAAASDVVH PTSRTSLHAM DSAQSIRSPQ RSPQPFAESM RSGNKVDDAE IKSKPNRRSV 780
  781 ALIKPGGLAG YVGTISSYRS FIEVVAKTDV YVGFLPLTSI ERIVDRYPIV LLTMAKRLTN 840
  841 LLPRLILHID FALEWLQVNA GQVIFHEGDE SEAIYIVLNG RLRLVEDRKD GGMNVKAEYG 900
  901 QGESIGELEV LTETSRSGTL HAIRDTELVK FPRTLFNSLA QEHPNITIKI SKIIASRMRA 960
  961 LIDDPSTMLG IKDSSGRSSI NKSSTTLNLR TVAVLPVSAG VPVVEFSNRL LSALTEVGAP1020
 1021 NGATSLNSAA VLNHLGKHAF NRMGKLKLSQ YLADLEEKYG LVIYVADTNV NAPWTQTCVA1080
 1081 QADCVLMVGL ADGSPEIGEY ERFMLGMKST ARKILVLLHQ ERYSNSGLTR KWLKNRVWIN1140
 1141 GGHFHVQMTY SPNAVPIHPP AKPSGPTLRE RVQILQAEIQ KYTSRKVRHS PFYSPDAPFK1200
 1201 GDFHRLARRL CGKSVGLVLG GGGARGIAQI GIIRAMQEAG IPIDIVGGTS IGAFIGALYA1260
 1261 RHADFVPIVN AAKKFSGRMA SMWRFALDLT YPSASYTTGH EFNRGIFKAF GNTQIEDFWL1320
 1321 DYYCNTTNIS KSRAEFHTSG YAWCHLGPTS SSPSTSAPST TTPRRPFGDS LSGMWAFFNR1380
 1381 WNPFSSVANP PTLAEIQARL AYVSSVDALE RAKTLPGCIY MRPPIEEYGT LDFGKFMEIY1440
 1441 GVGYKYGQEF LAKLRERGGV LPIGEEMGGK KGLRRTMAPR RASI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle