YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116196304, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTMWMSDSQ KIGVAFCSGG GFFLIAGVLL FFDRAMLAMG NILFLIGLTI IIGPQKTALF  60
   61 FARKQKLKGT AAFFGGLALI LLRWPLIGFL VELYGILVLF GDFLGTIATF ARNVPVVGPY 120
  121 IGMVVDRVGL GERRNAELPV

Type	Start	End	Confidence
Cytoplasmic	1	11	0.93
Transmembrane Helix	12	32	0.94
Non-Cytoplasmic	33	36	0.82
Transmembrane Helix	37	59	0.86
Cytoplasmic	60	68	0.84
Transmembrane Helix	69	87	0.87
Non-Cytoplasmic	88	92	0.54
Transmembrane Helix	93	124	0.58
Cytoplasmic	125	140	0.78