YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116196210, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPICIECRHP VKTLWREGGG DKSGGHNIRL TVCKNCGRFC DKYVEHDFVV LFIDLVLIKP  60
   61 QPSIIRLGVL LLLFDVYLTW ARIERQSAPA DPPDITDNEN NFGRLAQQPI VFQYMFFLIL 120
  121 CTLSTIAFHG SIRFLTSSRY SPLAALGLLP RYSRPNSVST ALLVSSSTKL FPILMVIWEY 180
  181 DVPAAARSLG WAVVANNVEA LKILLDCGYG VAALLAMAGA VSRWAMGRAV LWAAGLEGVD 240
  241 SAGESGVAED GRAFVAMLMY AREWAGRLAV G

Type	Start	End	Confidence
Cytoplasmic	1	62	0.83
Transmembrane Helix	63	81	0.70
Non-Cytoplasmic	82	109	0.82
Transmembrane Helix	110	132	0.88
Cytoplasmic	133	156	0.74
Transmembrane Helix	157	178	0.69
Non-Cytoplasmic	179	199	0.78
Transmembrane Helix	200	224	0.75
Cytoplasmic	225	271	0.83