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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CHO2_CHAGB
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.41
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSTAEPSG LDNVRHRARA ASSISTDTAP EAVTEKEREA RPNKTYGRTP DGTVFVVPET  60
   61 HDMVSQLLDP REPKNLSDVL VLAILALHIW AAYALPSSLK RPIFALIFLF WRASYNVGIG 120
  121 YLLTVQSNYK LMVIWAKRMQ LFENPSTGKN PRPWLYQLLQ NELEAKIPKD YKMAEAPLEY 180
  181 NTWLVFRRVV DLILMCDFVS YCLFAIVCAH KPVSEGFAIA AARWVIGIAL VGFNLWVKLD 240
  241 AHRVVKDYAW YWGDFFYLIE QELTFDGVFE MAPHPMYSIG YAGYYGISMM AASYDVLFIS 300
  301 ILAHAAQFAF LAIVENPHIE KTYNPPPPRQ RAESEVSSSE ATAESFRKST KTPSTPLPVH 360
  361 NMVGVHNFDP FRITDYTSVL LVGCFAALAL VTPSTPIYQA LFVVNAIVWR LWYSVGLGVI 420
  421 LTKQSNEKMF TRHFLKFGET AAEAWRQWKG MYHLSMTLCY VSFLAACWKM YNYPADWGYG 480
  481 WVLLKHVVGI SLVALQIWTA TSIYESLGEF GWFYGDFFFD STGKLTYKSI YRFLNNPERV 540
  541 IGTAGLWGMA LITWSSPIFL IALIGHILTL GFISYVEKPH MQKIYGENLR QEAGLTKFIK 600
  601 RSLPEPVKGL QMSVDKVWED SKHFFDDFVD VARTKLGAGS STIARDTSAL FNKYPARLTL 660
  661 SRISPDLAGY DPKHYSISME GTPLVGADEK ATGKESANAR VSKAVKTKVF EYGAPIRVKW 720
  721 TAPANHSKKD WVGLYMVTDN RSREVTEVPT LGRWVPARPS QYDTTTDEGI VSWDQPAKSP 780
  781 CPEVDFVQGE MVFEGDKLWW TQGVFEFRYH HNSGHNVMAI SEPFEVRLAK VDDEDTEVTG 840
  841 PREVEAALLP IVRNCLDRDP DIAPATVEER FGAHVERDSK YAKRVVYAIH HMFGVEFAPA 900
  901 VVPADGDVRK LAWRICSAKE VLAPYSMSQR LQSPSTPVRD KFPDSL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle