YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88180423, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFSDSFRIV NLVVAVAMIL GGIAQFFPIG FQSSIVGVYV IVFGLATGLL EFQIPPQVGR  60
   61 YASFLFSFIG RGIFYIFVGS ILFRDHWTRI APGSVVALVG IAYVALEFIP SIEPPANMRE 120
  121 ADAGWGSEQV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.90
Transmembrane Helix	7	29	0.87
Non-Cytoplasmic	30	34	0.70
Transmembrane Helix	35	54	0.87
Cytoplasmic	55	60	0.75
Transmembrane Helix	61	83	0.88
Non-Cytoplasmic	84	89	0.70
Transmembrane Helix	90	109	0.92
Cytoplasmic	110	130	0.78