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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|88180352, gi|...
Protein type: Transmembrane
Type Confidence: 0.60
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPARRTSRAA AKRAQQALES TPKTFDGLDD EDERMPDAAD AEDAEPEQEV DEEADKDDGS  60
   61 AAEEEAPEEE EEEEEAKSPT PPPEPVIRRR RLGRPPKNRP PDWDTLPIEP PNPDATPRRR 120
  121 GRGGWRGRGG RKGQHYQPTQ QSIDKDGTVL DIVNDEVDLP QDPEGEKKVD KLGNLEDGRE 180
  181 YRCRTFTLAN RGDRLYMLST EPARCVGFRD SYLFFTKHKK LYKIIVNDEE KRDMIERDII 240
  241 PHSYKGRSIG IVTARSVFRE FGALIIVGGR RIIDDYEVAK AREEGAVEGE LADPTDVYDA 300
  301 DKPYNKNQYV AWHGASAVYH SGGPSVPQQN VKVDTKKRRV AVNDVNWQLE HAREASQFNS 360
  361 MLSAVRRANR NGVYDIQTNQ MHYPAIMQPT HARIEQVVDG DEPEQPSAGS STMFPAIKPS 420
  421 ISRNFLVMDM HLETPPAGVS VAAYDVPFRT SQADYESSAS ADFLAPFKDL RSVPDDIRDL 480
  481 LPEECRQAFD SAREKENNWF DKWGNEAEMT SRRSVFEFHT YTGVGPEYPT PPEEHKEDTS 540
  541 VVYTQDKVRS AKGKKATPVS VRRRSGRAGR TGLPSSPTLS VASVRYKRIK SDLNDPNDGL 600
  601 VGTTVMVLGM WSLTRWMLGR VKKPRMVSVV GSLGSLIIGK GVRHVTWEAE SPICFSAEKV 660
  661 HRSSRYTCHG GMSI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle