YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88180320, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPPPADLP LTERLQRVAL TLQFAWFSGH AALLFCIFRY SFSWIRMNYY GGVAQFCYRF  60
   61 AFLSAAGTYG IVVYKTWRAR QKTGAKQPGG VLGYLSDENV QYLVMALVWL FMPQYPLALL 120
  121 PYGIYSIFHV ATYVGSTIVP TLNPPTKVAS PAGASPGAKP QFTQHPASEA IKSFVKQYYD 180
  181 SSMSVVSSLE ILLWIRLLLA VIFFQRRSWI LIALYTAFLR ARFAQSSHVQ SSFSQLEARI 240
  241 DNLIGAQGTP PVARQVWDGV KSTARQFHGA TDVNKYVNGA AAPKKTS

Type	Start	End	Confidence
Cytoplasmic	1	19	0.94
Transmembrane Helix	20	42	0.89
Non-Cytoplasmic	43	55	0.82
Transmembrane Helix	56	77	0.87
Cytoplasmic	78	101	0.87
Transmembrane Helix	102	133	0.57
Non-Cytoplasmic	134	183	0.73
Transmembrane Helix	184	210	0.63
Cytoplasmic	211	287	0.65