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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|88180175, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKSKPTKRE SASADRIADS RFASFETDPR YQLPSKKNLK TKLDKRFSRV LKDADFVATA  60
   61 RVDRYGRKLK TDTKKKALER LYEDEEEEEE KDGDAKVEDD DIVRRELEKA DTAYDPARNG 120
  121 GFSSSESDSD SDGQSDSEEA PEAEDGVEES RPGIRLRRDK QEVEEGEVTR RFAVVNIDWD 180
  181 HIKSMDLLAL FSSFVPVGGR IEKVSIYPSE FGKERMQHDE ADSASESEDD DDAAEDSDEE 240
  241 VRKELLQEGN DQDFDSDALR TYQLDRLRYH YAVVVCSDPN TAHKIYDATD GSEYLSSSNF 300
  301 LDLRFIPDDV TFDDEPRDEC DSVPAGYKPV EFVTDALQHS KVKLTWDMHP EEVSRKESIN 360
  361 KAFTGSRSDI AENDLRAYLA SDSESEGEEA DEAPPEAEDA EEAPLSKKEL ARRKMRAALG 420
  421 LGDEPAPKAS KSGPVGEMQI TFAPALSGKP EKEAVEETTI EKYKRKEKER KEKKKAMAIA 480
  481 KREGVEPEMV HEEQAEGGGD DLGFDDPFFT SEAVQPSKTA MRKEERLKKR AAKEQEEAEN 540
  541 AAQRAQLELL MADESGGGAH LDHFDMKDIT RAEKQKKKGK KKGKKGAEDQ GGLQEDFNMD 600
  601 VEDARFKAVF ENHEFAIDPS NPKYKATQGM KKLLEEGRKK RKAGPNESPS DKKDQRSAKK 660
  661 AKGGGDLELS SLADANAATA TIAVGSPSTP ARPSPAAVAG GMLGSGVGGG GGGAGAGSRR 720
  721 SRGCRSSRAS GDWGWGGVLR WWWWWWGGGC GSRGGWVGVG RGAASVKPVL GVVVVIAARF 780
  781 GGGLRLGLGD GEWRDVGVAA RGQRSGWISG VVAQVLGLLG LGCVWVAEVN AFPGCMLGCV 840
  841 AGHGVGAGDI VLSRLTEVVR ILSLHLGGGR VGLSRALWRL ARPGRPSRVV GLAEGRWRG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle