YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88180157, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.86
Transmembrane Helix	34	53	0.87
Cytoplasmic	54	78	0.85
Transmembrane Helix	79	99	0.92
Non-Cytoplasmic	100	104	0.78
Transmembrane Helix	105	126	0.93
Cytoplasmic	127	132	0.90
Transmembrane Helix	133	154	0.89
Non-Cytoplasmic	155	171	0.83
Transmembrane Helix	172	192	0.95
Cytoplasmic	193	200	0.89
Transmembrane Helix	201	226	0.85
Non-Cytoplasmic	227	237	0.82
Transmembrane Helix	238	258	0.94
Cytoplasmic	259	272	0.73
Transmembrane Helix	273	290	0.78
Non-Cytoplasmic	291	297	0.63
Transmembrane Helix	298	319	0.66
Cytoplasmic	320	799	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENAALAIIR HGTDLLNRTE TAAPVQERPP AFKAIGIGLA VGSGAFIGTS FVLKKVGLLR  60
   61 ANEKYNEVAG EGYGYLKNFY WWAGMILMIV GEGLNFAAYA FTDAILVTPL GALSVVITTV 120
  121 LSAIFLKERL SMVGKVACFL CIVGSVVIVM NAPHTSSVNN IQEMQGFVIH PAFLTYAGVV 180
  181 IVGSAVVALW LGPKYGNKNM LVYISICSWV GGLSVVATQG LGAAIIAQAG GTPQFNQWFL 240
  241 YVLLVFVIGT LLTEIIYLNK ALNLFNAALV TPTYYVYFTS TTIISSAILF RGFKGTPTSI 300
  301 ITVVNGFLTI CAGVVLLQLS KSAKDVPDTA IFTGDLDQIH TIAEQAQPET EPKADAIRGA 360
  361 AAIVRRLSSA RQKMELDELK RLREEKLQES LAPVSEDGAP QYEWDGIRRR RTGTISTHRS 420
  421 GGTPAPTHLA PPTPHLPLGW SHFPTEEELA EANRPVSPGL SSIVGTIRTR ARSVLPGHPE 480
  481 FRAKTPDASK VQSPMHPVQL TSVAVASSKP ASDDDFTASS RHVQFGQPTR HASDASGDSF 540
  541 ISALPPTPPP HATARRQFSF QSMFKRNQQS HSRTGSTDTT DRHHGHFRRP SSARPTSSRQ 600
  601 GPPSRHRRGA TEEETLGLVK GDSNSSQPDA GARSAPALPR HDDVSDEEDE DDASWEGKAL 660
  661 AKEGAYRDSD GDGDDGKNDR SSGLYGHSIT RGYGPAPGSS PPRSWRRDGE GEIVDDGEKP 720
  721 GWLERGEDER ERDDRAGARE YEQMRRRFAE QRRASAGNQR GNGDGYGGGG DGGEEEGLDR 780
  781 PPPPPPHGGT YRSRTGGFI