YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116194964, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWELTRRRW LRTLNSRFIY GRIPLLHAII FFIEMALFAR LTSRFNSYYD ERPLLTMMVT  60
   61 NSILGGVADT VAQTITSIRE RAVRKHPNGR LNPRDDALAI EIHELDRKNP FSNRELIPES 120
  121 KILPPPFDFE RLTRFMAYGF CMAPIQFRWF KFLEGAFPIT KMAAFMPAMK RVAFDQLIFA 180
  181 PFGVAAFFTA MTIAEGGGKR AVYQKMRDMY VPTLKANYAL WPAVQVINFR LMPVQFQLPF 240
  241 VSTVGIAWTA YLSLSNAAEN AQENRVPERS DIRLP

Type	Start	End	Confidence
Cytoplasmic	1	17	0.99
Transmembrane Helix	18	39	0.93
Non-Cytoplasmic	40	53	0.90
Transmembrane Helix	54	76	0.73
Cytoplasmic	77	171	0.66
Transmembrane Helix	172	194	0.85
Non-Cytoplasmic	195	235	0.46
Transmembrane Helix	236	255	0.62
Cytoplasmic	256	275	0.68