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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|88179884, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDDQPDPS SLSGMISTLA PVAVISAIYI AIFLVLRKSQ RRYYAPRTYL GSLREGERSP  60
   61 PLPNGLFNWV GSFWKIPDVY ALQHQSLDAY LYLRYLRMAL VLCFVGCCIT WPVLFPVNAT 120
  121 GGAKQTELNI LSYANIDRDN QYNRYYAHCF VGWAYFGFVM YLIMRECIFF INLRQAFLLS 180
  181 PFYADRLSSR TVLFTSVPEP YLNEASMRKV FGAAVKSVWI TGDTKEVDKL VEERDKAAMR 240
  241 LEKAEVKLIK LANKARQGAI KKGASPEEAD KAPIAGDAES GSIAARWVPP KKRPTHRLGF 300
  301 LGLVGKKVDT INWCRTELER LIPEVEAAQA KYRAGGFKNI PGVFVEFRTQ SDAEGASQIL 360
  361 AHHRGLHMTP KYVGIRPGEV IWKSLAIPWW QKVIRRYAVL GFIAAMILFW AIPVAFVGIV 420
  421 SNIDFLSSIS FLRWLNEIPD VIMGVVTGLL PSVLLSILMS LVPIVMRLCA KLAGEPSVSR 480
  481 VELFTQNAYF AFQVIQVFLV ATLSSSATAV AEQIVNNPTS APSILASNLP KASNLYISYF 540
  541 IVQGLTIATS VLTQVVGFFI FSLLYKFLAN TPRALYQKWS NLSAISWGST LPVYTNIVVI 600
  601 AITYSCIAPL MLGWATVAMF LFYFAWRYNI FFVTDTQIDT RGLIYPKAIK QLFTGIYLAE 660
  661 VCMIGLFGAS VAVGPLVLMV VFLVFTVLFH LSLNSALNPL LYNLPLTLLA EEESARLLDA 720
  721 EKGEAAVAAA VGPSNGNHHD LDGDGVIDPT EASVSHAREA RKATGQAGNF LTRFFKPWIY 780
  781 ADYTVLRALV PRNLHLDPYS DEVAANAYHP PSVTSGTPLL WIPSDAAGVS KQEVAHTSRV 840
  841 IPITDEGCEL NENGKLVWDH EGSRPPVWEE KVYF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle