YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116194732, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSLDSIVK GAPVTLPGQD PAKAAGGTTP IASSGAPPIP GKPGDPLSHT PSSPSMIYLN  60
   61 LLVLEASLRA QYLELRARRR HHTFFLSLLT LWTAFFGYAL FFAPREDGRG VGGSVYWVVE 120
  121 TTEHMCFLGG VVTGLLVWAT GIWERGVRWP RRWLAVSNRG LRGFNCKLVV MKRPWWKEAL 180
  181 STAGWFLTYG LFSNNGSSYR WVEPGLLREV DREMHLSRES HPTVHVTNWD EEKGGHEEDL 240
  241 APGGDYIKLL LLAKPFSPTF RENWELYRAE YWEKENERRA LLRVRIKERD RKLGKQNRGW 300
  301 FWWLPGRKVT MEKPVAAANE KAHHPRHAAV VSEHRRTRSG SASMRRGSMS SVHGPRTPTP 360
  361 KLEAEEYLLC DLA

Type	Start	End	Confidence
Cytoplasmic	1	82	0.88
Transmembrane Helix	83	103	0.94
Non-Cytoplasmic	104	123	0.91
Transmembrane Helix	124	143	0.96
Cytoplasmic	144	373	0.68