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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|88179521, gi|...
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.36
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQHPPQPVFT TSGSPSAQRA LPDRSVNSAS IEDAYTAFVL YCNPGVPIDT DSAALREAFR  60
   61 TPPKSGGKSF STYTLFELIK KLETKELKTW AELALKLGVE PPDQEKGQSS QKIQQYAVRL 120
  121 KSKRWMHSMH VDAFFEYLIG RESPYWTEIP PGHVPVAELE RDGVAAEDDM ALRALLPQIK 180
  181 PRRGRRKPED DETGKSPSQR PSPQAEEDGS GGQGNTTEPW TAQPDGRGGV FLFPPAADPS 240
  241 RLNPSAPTWG NEIVQTPMSA YLISQSAITL STRNVFWADE PSSSAAAPTS NPASINNNNT 300
  301 APPELPAPPA PQDPPPQPTQ TVNHFSPIQE SAPTRPAKRR MLSLQVPERK GGEVRLATPP 360
  361 LPEPATAPVV MINGQSAEPH GQPVLGAFND QIGGMPTEIP GAIASDSVPL GPIPGQPGTF 420
  421 TRDPTDRTNM AEIEALFVST LLDGDWYDIN QQPIPPGSVE EALAYSQTVI ETLRKTAHTN 480
  481 EAFLINLAGL AGGKFLMPKG SLRVNRLEEL SDRTRYSITW QLQFGGIVGV WTMDETVMHD 540
  541 RWKKPKKDDE AAPLSGSTTP TGTDGSQAEH WKKKYKELAA TLQQRDEEMM RLKPSARSIP 600
  601 PCPFLPRPRF DVLPLGAPLN PAFVIRLRYL ITHDHINITT VSLLPFQPRS NSSAMPKQYV 660
  661 FCGRPLPRLG TRHISLLLVF LAIFAVFSLL FTLPGSISAS PKLRAAGNRF SIPKSFKSPW 720
  721 MNKLNPFKQP SRPPRIQKTD TDGDSVWHAD WNWLLMPFSS SITLDENRAL LPMLKDRTPI 780
  781 YCYYDNTVKK DRSSGDAESA LLLTWRRAWW AQGFKPVILS PAEAMNNPLY HELQKLEDMT 840
  841 PKLKEDLMRW LAWENMGDGV LAHHLIFPMG PHDDPLFTYL RRGEFPKLTR FKDLDDGLFI 900
  901 GSMGDVTNVI KTVMNSAEIK KAEDIVALVE SSKKENPFSV DNAPESLAYY SARHVEKLYP 960
  961 KIGDDIAASH AAGLKSLTQL ISAHLHLTWQ NIFTGGIAVV KPLPHHTTHL ITPAYELAQR1020
 1021 LAHCPENPLP NTCPPNRPNC RLCDDSKPLK ITTPSSYSGV ATLYTIGTVP HPYTSSTLNY1080
 1081 LKTQLSIPWI RRDSPRDAWI TSLTSSLFSD SISTTPRLIS FKEAVASDED DINETKGKGK1140
 1141 ETKGGAYRSL WLPAEQPLPD DLDWHFGFAL PDGATYADQS TPGSTDDDAA AATRKGGVPL1200
 1201 HSSKDGPVPT TDDLALEPAL FTRAQTVVLS STSRITLKAK ASAEDLKLRD AVEAWNLADT1260
 1261 EAWRFARAYL ARKSVERAKW EEEETLYGGG VGAEKSHQQR PAGQGKEGGG KGKGSKVWDR1320
 1321 WLDRD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle