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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|116200089, gi...
Protein type: Globular with Signal Peptide
Type Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAEYKSKSW KKWLKKPFGR RRAASPAPSA TLSTDIQSSD QGNAEHGSKA SSIVATESCA  60
   61 PPSPSAAAAK AAQPRTNARV PNDHQPPAAS QALPPALPAE PAPKPPPTEC TDPPTPTLSV 120
  121 SERLWNAAYD SLETDNAELV VSYLKTLETV LGANPGITPD TDISAEFHDP TKRQIHMRRL 180
  181 VEEGRAKLSR ASKITNGVGD VADFVLSVKG IIDLAVQSVP QAALPWAGVC VGLQMLRNPA 240
  241 QAMKSNLAGL AHVISRMDWY CALTEHLLNK QNVATGKDIQ AVLRQLERSI VELYKSLLQY 300
  301 QMKSVCSYYH NQMLEFLRGM VNLDDWDVDL KLVTDAEATV QNDAAQSFQE QTKISLGKLV 360
  361 EHAEGMERRL GDIRQDIRDF ISLQKDARRD DIESACRRDL RVVDPQHDME RIEKNKDELL 420
  421 DDAYKWILRT PEYTAFTNWD DSGSDHLPRR LLWIKGHAGT GKTMLMIGLI RQLSDQPVAL 480
  481 SPALSFFFCQ GTHTALNNAT AVLRSLIWLL LLQQPCLISH LLQKYKESGA DLFRDQNAFI 540
  541 ALSEVFRNML KDPQLSPVYL AVDALDECVQ GRSDVIHLIS TSLSVSQKVR WLLSSRPEVD 600
  601 LLAGLKEQSV NSFNPSNSLV ELDTQRLEEP VNAYINHKLM GFKYRGGYDD RVLAEVSREV 660
  661 RQRAENTFLW VALVFKELSS VEGCDAVETV QSIPPGLTDL YGHMMTRIDE GNERNRQRCK 720
  721 NVLVATFLVH RPLSLSELIV VAGLPAKINP RAVVDRCGSF LTIKDETVYL IHQSAKDYLG 780
  781 DNYATRLQPA GPAQGHSEIV RRSTDAMSSM LRHNIYNLDR GFKPENMAAP DPDPLAPIRY 840
  841 SCVFWADHLC SLNSDNSRFL GELTDDGKVF GFLKECFLRW LESLSLIGQL SSGLFSIRKI 900
  901 LHAAQTYGSA LVFSPTLSEI RNRYWKERLS VIEMAAGIRD HWGAHRQTLE GHGDWVSAVA 960
  961 FSPDGNTLAS TSDDKTIRLW DTATGAHRQT LEGHGHWVRA VAFSPDGNTL ASASDDKTIR1020
 1021 LWDTATGAHR QTLEGHGDSV RAVAFSPDSN TLASASRDKT IRLWDTATGA HRQTLEGHGH1080
 1081 WVSAVAFSPD GNTLASASDD TTIRLWDTAT GAHRQTLEGH GDSVRAVAFS PDSNTLASAS1140
 1141 DDKTIRLWDT ATGAHRQTLE GHGHWVSAVA FSPDGNTLAS ASDDTTIRLW DTATGAHRQT1200
 1201 LEGHGDSVRA VAFSPDGNTL ASASDDKTIR LWDTATGAHR QTLEGHGHWV RAVAFSPDGN1260
 1261 TLASASDDTT IRLWDTATGA HRQTLEGHGD WVNAVAFSPD GNTLASASRD KTIRLWDTAT1320
 1321 SAHRQTLEGH GHWVRAVAFS PDGNTLASAS RDKTIRLWDT ATSAHRQTLE GHGDWVSAVA1380
 1381 FSPDGNTLAS ASDDTTIRLW DTATGAHRQT LEGHGDWVRA VAFSPDGNTL ASASDDTTIR1440
 1441 LWDTATGAHR QTLEGHGDWV SAVAFSPDGK CLETNRGLLS ITVNSEALSS SGGQKPASGF1500
 1501 LFVDDDWVTI DGKHVLWLPA DYRATCVAVH GHTLILGHSS GRVTFFRFAF AE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle