YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88179417, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTRRTRNVP GTPRVISPSP TRSELDANGE GSSLYNGPTT RSAARRRLAS TPQPAPWELD  60
   61 EDDSPDLQRA RSRSRSPIDT RTLRRLTTRK PSVTTNGAPP TTAAASTNGH TKPADTNGHL 120
  121 SPPTSTTTYY GWSWRDFSRS PSPLGLIPIH RRWRAFVHKH EVPRKALHVS IGFFVVWLYL 180
  181 SGTQTRAVCP YLMGALVPIA AVDVLRHHYA PFNRVYVRVL GALMRESEFA GYNGVIFYLL 240
  241 GAWAALYCFP KDVAVMGTLL LSWCDTAAST FGRLYGRYTP RIRRGKSLAG SLAAFVVGVG 300
  301 TSVFFWGWLA PTKGPFPGDE LFMFTGALSL PRVLADAVGL EPAAATITGG LALGVMSMWS 360
  361 GLVAATSEAM DVFGWDDNLT IPVLSGVGIW GFLKVFG

Type	Start	End	Confidence
Cytoplasmic	1	161	0.97
Transmembrane Helix	162	181	0.88
Non-Cytoplasmic	182	187	0.80
Transmembrane Helix	188	209	0.89
Cytoplasmic	210	228	0.94
Transmembrane Helix	229	247	0.96
Non-Cytoplasmic	248	253	0.78
Transmembrane Helix	254	276	0.89
Cytoplasmic	277	287	0.91
Transmembrane Helix	288	309	0.94
Non-Cytoplasmic	310	342	0.62
Transmembrane Helix	343	365	0.87
Cytoplasmic	366	372	0.51
Transmembrane Helix	373	393	0.73
Non-Cytoplasmic	394	397	0.38