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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|88179243, gi|...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTDEKVYPS GQHYSGSNRI PNIKQFVESL DREKRERDAQ IDSQQQQQQQ QQQQQQRHQP  60
   61 TKGGGHDDNG EVRDHVPTNH RKAGKNRRTV RDPMTGKDVE IEDISSEHMK AAEEPMLTIP 120
  121 NANLSLPTTQ QTLPTQSGET YRHAQDITAP PDPIAAGSTS DVPIHGEKTN VLFHPTPAVS 180
  181 YEPMYAALEA RANALCAGLF VGVVVLGKWW GGGSVWGLVP LGAGVAAGVY MWVRDLVARG 240
  241 RAVEWSAERK RGEMAVVNLI PESVEWLNTA VGLVWGLMNP DMFAAVADTL EDVMQASVPG 300
  301 VIEHVKVNEI SQGSNPLRVL SLRALPDGHV QDLKEEIHRR DSKVKDPQQL AAEEEGGDFY 360
  361 NLEATVAYHS LPSSGDVSSK AKNMGMQLVF YLGVRGLFGV PLPIWVELNR LVATARLRVA 420
  421 LAPDPPFVKT LSFTLMGLPK VEASCVPLVE RGANILNLPL ISNFVNWAIA AAANMYVAPK 480
  481 SMTLDVGKML QGDDIKKETN ALGVLFIRIH KAVGLSKQDR RGSEGGGSDP YICVSFSKFG 540
  541 KPQYCTRVIQ DDLNPIFSEC CALPITADVI KADEQLSLEL WDSDRSSADD VVGKVELSIQ 600
  601 KLIQHPGHMF PQTSQLKGVK AGSTMPGELH WEVGYFGKTQ FRRALRTDGL DPNLPRGLRD 660
  661 KKELRDDRGS LDTAEEDAVV HTPPDPLWPS GVLSVVVHQI VNLELENVKG SRGGKRSGGR 720
  721 EYEPARPEAG EIKEEQGKKL PSAYCTVLVN DELVYKTRTK VVSSRPIFEA GTERFVRDWR 780
  781 SCVVTVTVRD SRNRQHDPII GVVPLRLSDI LQTSSQSTRW YPLDGGIGFG RIRISLLFRS 840
  841 VELRLPPAQL GFGEVGTFEF TSDALTTTGY SPSPHTKIRM RTGGSSASVK GNVCSRRTDD 900
  901 ETGLTWDISG GGDASNDEHA DEQQQQQQQH HKKKPKHNKS TRIRLPVRFR YRSPVFFEFH 960
  961 PPSNTGLRRK ADTFASLWLQ DIPDNEEQDF DLPVWRCSNG LRLSQNYITE ANVNSVPALR1020
 1021 VEEVGRLRFR GRFKPGTDRD HLRFVSDNDS RETIETWEAC FAEGVRAEHV HPEVPPAVQK1080
 1081 LHEESLTHGR DVLAMAPEEE KKRWLAKDGT DWSGAFGEDP AKLVGEERRG EGEGEGEVDG1140
 1141 EQLSEEEDSS EEEEEEEVDL GIDDATHDKG KGRASVGSSE EGEGGNGNYT WKGGEDGPNG1200
 1201 PDGHSRKSMD SGATGATGAT SKSNKSGGSS SSKNPIAHYL NRLMLTRAGK PMRNVQFAKD1260
 1261 EAVYATRRLM KVGSLSGRKP DVETEV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle