YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116199519, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTELLTSDEE AAAARAAEQA RQRKARREAK IKAGAENRLN RITGLGGGVP RDPAPAPAAS  60
   61 KTATATTTPS APVSTAAAQH ADPDEVDISE HFYQPQTTAR VPPPDSNLSD TQLRQMMLGF 120
  121 DQPGTATPPM PGMPGMPSPP PGMEDDPMMR MMMQMLGGGG NNPFGGGMPG MPFPPSTTPG 180
  181 SGAQPFPPQP QQSATNRHAT LWRLLHALIA LALGLYIAVY TPFTGSKLSR DSAAAAAAGS 240
  241 AEARADFGAS PSQNYFWAFA TAEALLLGTR HFVADRGRSR LQAAAAGGSG MLGMAVGFLP 300
  301 AGLRSKVELA MRYGEVLGSV RADVLVCVFV LGVAAWVRG

Type	Start	End	Confidence
Cytoplasmic	1	200	0.89
Transmembrane Helix	201	220	0.92
Non-Cytoplasmic	221	254	0.70
Transmembrane Helix	255	274	0.82
Cytoplasmic	275	280	0.76
Transmembrane Helix	281	303	0.88
Non-Cytoplasmic	304	316	0.71
Transmembrane Helix	317	337	0.87
Cytoplasmic	338	339	0.66