YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116199481, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	188	0.95
Transmembrane Helix	189	206	0.91
Non-Cytoplasmic	207	225	0.84
Transmembrane Helix	226	245	0.96
Cytoplasmic	246	255	0.83
Transmembrane Helix	256	275	0.94
Non-Cytoplasmic	276	281	0.75
Transmembrane Helix	282	301	0.89
Cytoplasmic	302	313	0.77
Transmembrane Helix	314	335	0.79
Non-Cytoplasmic	336	346	0.75
Transmembrane Helix	347	367	0.91
Cytoplasmic	368	432	0.95
Transmembrane Helix	433	455	0.86
Non-Cytoplasmic	456	463	0.84
Transmembrane Helix	464	485	0.89
Cytoplasmic	486	498	0.74
Transmembrane Helix	499	520	0.92
Non-Cytoplasmic	521	527	0.80
Transmembrane Helix	528	550	0.87
Cytoplasmic	551	564	0.85
Transmembrane Helix	565	586	0.65
Non-Cytoplasmic	587	593	0.61
Transmembrane Helix	594	614	0.92
Cytoplasmic	615	737	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCAQRAYLAS RGRQQEEQKA QKVGCEQGSS PVCPITFKIP SSNPTRLPSN IPLRTLPAHG  60
   61 ERPDLQRNRE QASSLLAPHG RGHPVDHPGY SSESEEDDSS CTDTGDIAEQ LDDEDPLRER 120
  121 VTETLDGDDT LAGVLKKKHH NRHSKRVRYR EPLSSGSSRS TSRHAGVIDK EAIQIPNIGN 180
  181 RKPSRAERLL AAIMTGGSSS IHGLTGKPLL GEYFKEYFHD PTPVQIATMV AILEVGAFIS 240
  241 SLVVGRVGDI IGRRRTIFYG SCVFFVGGAM QSFAVNMAMM MTGRVLAGLG VGMLSTIVPV 300
  301 YQSEISPPHN RGQLACIEFT GNIIGYATSV WVDYFCMYIK SDLSWRLPLL MQCVMGGLLG 360
  361 LGSLIIVESP RWLLDNDHDE EGIVVIANLY GGGDIHNPRA RDEFRDIKMN VLMQRQEGER 420
  421 TYGEMFKRYG RRVFIAMSAQ ALAQLNGINV ISYYAPYLFE RAGWIGHAAV LMAGINGITY 480
  481 VLSTIPPWYI VDRWGRRPIL LSGAIAMTLS LSLIAYVQYL DIPATPKLVV ILVVIYNAAF 540
  541 GYSWGPIPWL YPPEILPLKI RSKGASLSTA TNWAFNFLVG EMTPILQELI AWRLYLVHAF 600
  601 FCAVSFVVVY FLYPETCGVR LEDMDVLFGD STRAFNTPSA GTPAIHAESD ALLRPASPIT 660
  661 GLDAARNRSP LGRHAASAAI PGLDIEPPVD VEADIKPSQG GGGGSGGVGG WFSKMIGRGG 720
  721 SGEGSGGAYA AVEQREN