YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88179040, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPPDLSNSI SLHPHPFRTQ SDSASRLART QSPRPSSMTG NGASTGVEPT EGGDEGAVAR  60
   61 HPPSAPGDVE VESQRAGRFS PSSAPANDPY GLSQRYKTAS ELAEIKANTS RKRDAAHQPS 120
  121 PTVTAKASTT STLAGYIKPF GRKATTARRL EGFYQAQNET IERLLKSVEE HRAEARQEQG 180
  181 EDHLKFKIAI WGSLVANIIL TGLQLYAAIS SGSLSLFTTM ADAIFDPLSN VTLILTNRAV 240
  241 RRVDPARFPS GKARLETVGN IVFCFLMTAV SLIIIAFAAR ELSESADELK PFFLPSIISV 300
  301 CIAFGTKLTL FLYTWSIKDK YSQVRILWQD HRNDLLVNGF GILTSVGGSK LVWWLDPAGA 360
  361 IVLSVVITSL WLRTAFTEFL LLVGVVAPVE IQQLITYVCL THSPAIRQID TVRAYHSGPR 420
  421 LIAEVDVVMD PDATLQETHD IAEELQIKLE RLPDIERAYV HVDYETTHKP EHAFKKDL

Type	Start	End	Confidence
Cytoplasmic	1	187	0.96
Transmembrane Helix	188	208	0.90
Non-Cytoplasmic	209	215	0.73
Transmembrane Helix	216	237	0.80
Cytoplasmic	238	256	0.86
Transmembrane Helix	257	279	0.93
Non-Cytoplasmic	280	291	0.88
Transmembrane Helix	292	315	0.89
Cytoplasmic	316	334	0.88
Transmembrane Helix	335	354	0.67
Non-Cytoplasmic	355	357	0.53
Transmembrane Helix	358	386	0.61
Cytoplasmic	387	478	0.75