YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116199203, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTASPVAAL LEKLPVPTVD RPFGIHLWPI FSKAFEYVVG YSADEFTFQP GSTPMSTLKE  60
   61 TSIFIVIYYT IIFGGRELMR NREPFKLRTL FLIHNFYLTA ISAILLALFI EQILPTVVRH 120
  121 GIFHAICAIE GGWTQPLVVL YYLNYLTKYL ELLDTCFLFL KKKPLTFLHC YHHGATALLC 180
  181 YTQLIGSTSV SWVVISLNLM VHVVMYWYYF QSARGIKIWW KEWITRLQII QFVIDLGFVY 240
  241 FASWTYFTST YFQWLPNAGK CAGEEFAAFS GIAIISSYLL LFISFYLATY KKDGKRPSGR 300
  301 KAVRRMSQAP LPDPIHGSAA NANSYGNGDA KSTGVKTNGT ATRSRRA

Type	Start	End	Confidence
Cytoplasmic	1	89	0.53
Transmembrane Helix	90	110	0.92
Non-Cytoplasmic	111	121	0.73
Transmembrane Helix	122	144	0.78
Cytoplasmic	145	164	0.76
Transmembrane Helix	165	185	0.77
Non-Cytoplasmic	186	190	0.75
Transmembrane Helix	191	210	0.94
Cytoplasmic	211	226	0.92
Transmembrane Helix	227	248	0.89
Non-Cytoplasmic	249	265	0.94
Transmembrane Helix	266	290	0.89
Cytoplasmic	291	347	0.99